View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_high_27 (Length: 241)
Name: NF7400_high_27
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_high_27 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 26078968 - 26079100
Alignment:
| Q |
109 |
gtacctgtgtgtgcgcgcgtgcgctctacctttattgtttcaagtgtgactttcatttgttaattattcccaacttctgtggtttaggtgaacaatatca |
208 |
Q |
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| T |
26078968 |
gtacctgtgtgtgcgcgcgtgtgctctacctttattgtttcaagtgtgactttgatttgttaattattcccaacttctgtggtttaggtgaacaatatca |
26079067 |
T |
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| Q |
209 |
gtggctaccttcctggacggattgtctttttct |
241 |
Q |
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| T |
26079068 |
gtggctaccttcctggacggattgtctttttct |
26079100 |
T |
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Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 27625605 - 27625412
Alignment:
| Q |
21 |
taagtaccaactatagaacttatttttgtcttaaattcatcaactcgtcttatttttatgcgaacattagctttatattgaatatagggtacctgtgtgt |
120 |
Q |
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| T |
27625605 |
taagcaccgactatagaacctttttttgtcttaaattcatcagctcatcttatttttatgcgaacattagctttatattgaatataaggta--tctgtgt |
27625508 |
T |
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| Q |
121 |
gcgcgcgtgcgctctacctttattgtttcaagtgtgactttcatttgttaattattcccaacttctgtggtttaggtgaacaatatcagtggctac |
216 |
Q |
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| T |
27625507 |
gcgtgtgtgcgctttacctttatatattcagcagtgacttcgatttgttaatcattcccaacttctgtggtttaggtgaacaatatcagcggctac |
27625412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 30595736 - 30595789
Alignment:
| Q |
188 |
tggtttaggtgaacaatatcagtggctaccttcctggacggattgtctttttct |
241 |
Q |
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| T |
30595736 |
tggtttaggtgaacaatatcagtggctacctacctggcagaattgtctttttct |
30595789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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