View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_high_29 (Length: 238)

Name: NF7400_high_29
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_high_29
NF7400_high_29
[»] chr4 (5 HSPs)
chr4 (1-107)||(50375342-50375448)
chr4 (158-221)||(50375447-50375510)
chr4 (151-220)||(10185224-10185293)
chr4 (24-85)||(34791691-34791752)
chr4 (151-220)||(41751258-41751327)
[»] chr6 (5 HSPs)
chr6 (24-85)||(4073007-4073068)
chr6 (151-190)||(882746-882785)
chr6 (156-195)||(12766650-12766689)
chr6 (129-190)||(32888920-32888982)
chr6 (144-188)||(3482108-3482152)
[»] chr8 (5 HSPs)
chr8 (120-190)||(16972018-16972089)
chr8 (144-223)||(32736489-32736568)
chr8 (121-191)||(2764424-2764495)
chr8 (144-190)||(32927952-32927998)
chr8 (151-223)||(3206084-3206156)
[»] chr7 (2 HSPs)
chr7 (146-196)||(46344646-46344696)
chr7 (120-223)||(25156227-25156331)
[»] chr2 (4 HSPs)
chr2 (143-189)||(38074470-38074516)
chr2 (151-190)||(1976850-1976889)
chr2 (120-190)||(16518838-16518909)
chr2 (151-195)||(15220847-15220891)
[»] chr3 (5 HSPs)
chr3 (153-220)||(37335022-37335089)
chr3 (151-181)||(31130043-31130073)
chr3 (159-197)||(36302236-36302274)
chr3 (144-223)||(33791984-33792064)
chr3 (156-220)||(51285600-51285664)
[»] chr1 (5 HSPs)
chr1 (120-190)||(11817271-11817342)
chr1 (150-189)||(47053465-47053504)
chr1 (144-190)||(1514403-1514449)
chr1 (144-196)||(4458440-4458492)
chr1 (163-195)||(45557361-45557393)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 50375342 - 50375448
Alignment:
Q  1 atattttccttcaattccaaaaatgcaagttttcccttgctttgcaaatacaacacgtcggcattgtaaaatttcacgaaggaaatctttggaatgtatt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50375342 atattttccttcaattccgaaaatgcaagttttcccttgctttgcaaatacaacacgtcggcattgtaaaatttcacgaaggaaatctttggaatgtatt 50375441  T
Q  101 gcaacac 107  Q
    |||||||    
T  50375442 gcaacac 50375448  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 50375447 - 50375510
Alignment:
Q  158 acattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaa 221  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  50375447 acattcatgtaaaagtgacttaaacaataaattcaagtgcaaaaataaattatagaataaaaaa 50375510  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 10185293 - 10185224
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaa 220  Q
    |||| ||||||| |||||||||||||||||||||||||||  |||| | | || ||||||||||| ||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaa 10185224  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 34791752 - 34791691
Alignment:
Q  24 tgcaagttttcccttgctttgcaaatacaacacgtcggcattgtaaaatttcacgaaggaaa 85  Q
    ||||||||||||||||||||||||||||||| ||  ||||| |  || ||||||||||||||    
T  34791752 tgcaagttttcccttgctttgcaaatacaactcgcaggcatcgagaagtttcacgaaggaaa 34791691  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 41751258 - 41751327
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaa 220  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||  | |||| |||| |||||| ||||    
T  41751258 tttgaatacattcatgtaaaactgaattaaacaataaatttaagtttaaaaatcaattctagaatcaaaa 41751327  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 4073068 - 4073007
Alignment:
Q  24 tgcaagttttcccttgctttgcaaatacaacacgtcggcattgtaaaatttcacgaaggaaa 85  Q
    |||||||||||||||||||||||||||||||| || |||||||  || ||||||||||||||    
T  4073068 tgcaagttttcccttgctttgcaaatacaacatgttggcattgggaagtttcacgaaggaaa 4073007  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Complemental strand, 882785 - 882746
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  882785 tttggatacattcatgcaaaagtgagttaaacaataaatt 882746  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 12766650 - 12766689
Alignment:
Q  156 atacattcatgtaaaagtgagttaaacaataaattcaagt 195  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  12766650 atacattcatgcaaaagtgagttaaacaataaatttaagt 12766689  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 32888920 - 32888982
Alignment:
Q  129 agttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    ||||||||| ||||| |||| | |||||||| ||| ||||||||||||||| |||||||||||    
T  32888920 agttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaatt 32888982  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 3482152 - 3482108
Alignment:
Q  144 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaa 188  Q
    |||||| ||||||||||||||||||||||| |||| ||| |||||    
T  3482152 atttgtgtttgaatacattcatgtaaaagtaagttgaactataaa 3482108  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 16972018 - 16972089
Alignment:
Q  120 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||||||| ||||||||  ||||| |||||| ||||||||||||||||||||||||| || |||||||||||    
T  16972018 ctaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatt 16972089  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 32736568 - 32736489
Alignment:
Q  144 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaact 223  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||   ||| | |||| ||||||| |||||||||||    
T  32736568 atttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaaaact 32736489  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 2764424 - 2764495
Alignment:
Q  121 taaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattc 191  Q
    ||||||||||||||| | ||| | |||| |||||| ||||||||| ||||||||||||| ||| ||||||||    
T  2764424 taaaagtaagttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaaccataaattc 2764495  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 32927998 - 32927952
Alignment:
Q  144 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatt 32927952  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 3206156 - 3206084
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaaact 223  Q
    |||||||||||| || ||||| | | |||||||||||||| ||||| | | || ||||||| |||||||||||    
T  3206156 tttgaatacatttatataaaaataaattaaacaataaatttaagtgtaaagatcaattttataataaaaaact 3206084  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 46344696 - 46344646
Alignment:
Q  146 ttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtg 196  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||| |||||    
T  46344696 ttgtatttgaatacatttatgcaaaagtgaattaaacaataaatttaagtg 46344646  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 25156331 - 25156227
Alignment:
Q  120 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaa 218  Q
    |||||| | ||||||||| ||||| |||||| ||||||||||||||| |||||||||||| |   || |||| | ||| | |||| |||| |||||||||    
T  25156331 ctaaaaatgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagttgatttattaatttatgtgtaaaaatcaattctagaataaa 25156232  T
Q  219 aaact 223  Q
    |||||    
T  25156231 aaact 25156227  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 38074516 - 38074470
Alignment:
Q  143 tatttgtatttgaatacattcatgtaaaagtgagttaaacaataaat 189  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  38074516 tatttgtatttaaatacatttatgtaaaagtgagttgaacaataaat 38074470  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 1976850 - 1976889
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  1976850 tttggatacattcatgtaaaagtgagttcaacaataaatt 1976889  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 16518909 - 16518838
Alignment:
Q  120 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||||||| |||||| |  ||||| |||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatt 16518838  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 15220847 - 15220891
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaacaataaattcaagt 195  Q
    |||| |||||||||||| |||||||||| ||||||||||| ||||    
T  15220847 tttggatacattcatgttaaagtgagttgaacaataaattgaagt 15220891  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 37335022 - 37335089
Alignment:
Q  153 tgaatacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaa 220  Q
    ||||||||||||| ||||| |||||| |||||| |||||||||| | |||| |||| |||||| ||||    
T  37335022 tgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaa 37335089  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 31130043 - 31130073
Alignment:
Q  151 tttgaatacattcatgtaaaagtgagttaaa 181  Q
    |||||||||||||||||||||||||||||||    
T  31130043 tttgaatacattcatgtaaaagtgagttaaa 31130073  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 36302274 - 36302236
Alignment:
Q  159 cattcatgtaaaagtgagttaaacaataaattcaagtgc 197  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  36302274 cattcatgtaaaagtgagttgaacaataaatttaagtgc 36302236  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 33791984 - 33792064
Alignment:
Q  144 atttgtatttgaatacattcatgtaaaagtgag-ttaaacaataaattcaagtgcacaaataaattttagaataaaaaact 223  Q
    |||||| |||| ||| ||||||||||||||||| |||||||||||||| | ||| | |||| |||| || ||| |||||||    
T  33791984 atttgtgtttggatagattcatgtaaaagtgagtttaaacaataaatttatgtgtaaaaatcaattataaaatcaaaaact 33792064  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 51285664 - 51285600
Alignment:
Q  156 atacattcatgtaaaagtgagttaaacaataaattcaagtgcacaaataaattttagaataaaaa 220  Q
    ||||||||||||||||| | ||||||||| |||||  |||||| |||| |||| |||||| ||||    
T  51285664 atacattcatgtaaaagcgggttaaacaacaaatttgagtgcaaaaatcaattctagaatcaaaa 51285600  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 11817271 - 11817342
Alignment:
Q  120 ctaaaagtaagttgaagaaaaaat-atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||||||  ||||||||| ||||| |||| |||||||||||||| |||||||||| |||| ||| |||||||    
T  11817271 ctaaaagcgagttgaagataaaatgatttttatttgaatacattaatgtaaaagttagttgaactataaatt 11817342  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 47053504 - 47053465
Alignment:
Q  150 atttgaatacattcatgtaaaagtgagttaaacaataaat 189  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  47053504 atttggatacattcatgtaaaagtgagttaaactataaat 47053465  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 1514449 - 1514403
Alignment:
Q  144 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaatt 190  Q
    |||||| |||| |||||||||||||||| |||||| |||||||||||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatt 1514403  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 4458492 - 4458440
Alignment:
Q  144 atttgtatttgaatacattcatgtaaaagtgagttaaacaataaattcaagtg 196  Q
    |||| |||||| ||||||||| |||||||||| ||  ||||||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtg 4458440  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 45557393 - 45557361
Alignment:
Q  163 catgtaaaagtgagttaaacaataaattcaagt 195  Q
    |||||||||||||||| ||||||||||||||||    
T  45557393 catgtaaaagtgagttgaacaataaattcaagt 45557361  T

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