View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_high_3 (Length: 615)
Name: NF7400_high_3
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 7 - 601
Target Start/End: Original strand, 45377338 - 45377931
Alignment:
| Q |
7 |
tttggtggttaaataacattactccaagcttcaaaagtcacatacacataaacatgtaaaaccgtttataactctatttcatatccactgctcagcacaa |
106 |
Q |
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| T |
45377338 |
tttggtggttaaataacattactccaagcttcaaaagtcacatacacataaacatgtaaaaccgtttataactctatttcatatccactgctcagcacaa |
45377437 |
T |
|
| Q |
107 |
ttcaatacgcctcctgatccccctgttagccacacaatcacaattgaatgaaatttgtattagaagtataacaacatatctaattaatccattaatttca |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45377438 |
ttcaatacgcctcctgatccccctgtcagccacacaatcacaattgaatgaaatttgtattagaagtataacaacatatctaattaatccattaatttca |
45377537 |
T |
|
| Q |
207 |
atttgataaaatgaagnnnnnnnngttgaatgaattgatgaactcactttctttggaataataaaatcaacaaacttcttcttggtcttggctccagtgg |
306 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45377538 |
atttgataaaatgaagaaaaaaa-gttgaatcaattgatgaactcactttctttggaataataaaatcaacaaacttcttcttggtcttggctccagtgg |
45377636 |
T |
|
| Q |
307 |
gtgacnnnnnnnnnnnnnnnnnnnnctggttgttctctggaggatggtggtggacccgctggtgttccttctctgtcacatattttcgtatatgatctct |
406 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45377637 |
gtgactttttgttttgtttttgttgctggttgttctctggaggatggtggtggacccgctggtgttccttctctgtcacatattttcgtatatgatctct |
45377736 |
T |
|
| Q |
407 |
cacaaacctctcatacaagtaagcagcccccatgaactgaggtaacaccaaccatgctgccaccaatagcttcacatcgtaccaaattggtatcctacaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45377737 |
cacaaacctctcatacaagtaagcagcccccatgaactgaggtaacaccaaccatgctgccaccaatagcttcacatcgtaccaaattggtatcctacaa |
45377836 |
T |
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| Q |
507 |
atttccaatccattttttcattacatattcctagtacttatgtgtataataatcaatttcattcattctaaagacaattaaaaatagttaaaact |
601 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45377837 |
atttccaattcattttttcattacatattcctagtacttatgtgtataataatcaatttcattcattctaaaaacaattaaaaatagttaaaact |
45377931 |
T |
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