View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_high_8 (Length: 372)

Name: NF7400_high_8
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_high_8
NF7400_high_8
[»] chr4 (2 HSPs)
chr4 (18-352)||(33895538-33895871)
chr4 (262-353)||(54573192-54573282)
[»] chr8 (2 HSPs)
chr8 (262-353)||(33574180-33574270)
chr8 (251-352)||(45103808-45103909)
[»] chr7 (3 HSPs)
chr7 (262-353)||(15674203-15674293)
chr7 (262-352)||(41767830-41767919)
chr7 (265-337)||(19294656-19294728)
[»] chr3 (1 HSPs)
chr3 (262-329)||(20692182-20692249)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 33895538 - 33895871
Alignment:
Q  18 atgaacatgttcggtttaccaagatacaactttaagatgacgatgatacgagaatcatgttctctatatttgatcaatttagttttaaaagaccggtcga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33895538 atgaacatgttcggtttaccaagatacaactttaagatgacgatgatacgagaatcatgttctctatatttgatcaatttagttttaaaagaccggtcga 33895637  T
Q  118 gttaggcgctatcttggtaggacatgttcatgcttttaggataagtttaattcatcctagagacatttggttaatgtcttgcatttttgtagttaatgat 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33895638 gttaggcgctatcttggtaggacatgttcatgcttataggataagtttaattcatcctagagacatttggttaatgtcttgcatttttgtagttaatgat 33895737  T
Q  218 tnnnnnnngtggttgacaacacataatttcatctggtggttaaaccattaccttgattggacatctatctgtaataggggtctcagcatatggccacttt 317  Q
    |       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33895738 t-aaaaaagtggttgacaacacataatttcatatggtggttaaaccattaccttgattggacatctatctgtaataggggtctcagcatatggccacttt 33895836  T
Q  318 ttgttttgtaacctaagattattatgatgtaactt 352  Q
    |||||||||||| ||||||||||||||||||||||    
T  33895837 ttgttttgtaacttaagattattatgatgtaactt 33895871  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 54573192 - 54573282
Alignment:
Q  262 ccattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacctaagattattatgatgtaacttg 353  Q
    ||||||||||| |||| |||| |||||||||||||||||| |||  ||||||| |||||||||||| |||| ||||||| ||||||||||||    
T  54573192 ccattaccttgtttgggcatccatctgtaataggggtctcggcacttggccac-ttttgttttgtatcctatgattattctgatgtaacttg 54573282  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 33574270 - 33574180
Alignment:
Q  262 ccattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacctaagattattatgatgtaacttg 353  Q
    ||||||||||| ||| ||||| |||||||||||||||||| |||  || |||| |||| ||||||| |||| ||||||||||||||||||||    
T  33574270 ccattaccttgtttgaacatccatctgtaataggggtctcggcacttgaccac-ttttattttgtatcctatgattattatgatgtaacttg 33574180  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 45103909 - 45103808
Alignment:
Q  251 tggtggttaaac-cattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacctaagattattatgatgtaa 349  Q
    |||||||| ||| ||||| |||| |||| |||| |||||||||||||||||| |||  ||||||| |||||||||||| |||| ||||||| ||||||||    
T  45103909 tggtggttgaactcattatcttgtttgggcatccatctgtaataggggtctcggcacttggccac-ttttgttttgtatcctatgattattttgatgtaa 45103811  T
Q  350 ctt 352  Q
    |||    
T  45103810 ctt 45103808  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 15674203 - 15674293
Alignment:
Q  262 ccattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacctaagattattatgatgtaacttg 353  Q
    ||||||||||| |||| |||| |||||||||||||||||| |||  ||||||| |||||||||||| | || ||||||| ||||||||||||    
T  15674203 ccattaccttgtttgggcatccatctgtaataggggtctcggcacttggccac-ttttgttttgtatcatatgattattctgatgtaacttg 15674293  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 352
Target Start/End: Complemental strand, 41767919 - 41767830
Alignment:
Q  262 ccattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacctaagattattatgatgtaactt 352  Q
    ||||||||||| |||| | || |||||||||||||||||| |||  ||||||| |||||||||||| |||| ||||||| |||||||||||    
T  41767919 ccattaccttgtttgggcgtccatctgtaataggggtctcggcacttggccac-ttttgttttgtatcctatgattattctgatgtaactt 41767830  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 19294656 - 19294728
Alignment:
Q  265 ttaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaacctaagatt 337  Q
    |||||||| |||| ||||||| | |||||| ||| ||||||  |||||||||||| ||||||| |||| ||||    
T  19294656 ttaccttgtttgggcatctatttataatagcggtatcagcacttggccactttttattttgtatcctatgatt 19294728  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 20692249 - 20692182
Alignment:
Q  262 ccattaccttgattggacatctatctgtaataggggtctcagcatatggccactttttgttttgtaac 329  Q
    ||||||||||| || | ||||||| ||||||||||||||  |||  ||||||||||||||||||||||    
T  20692249 ccattaccttgtttaggcatctatatgtaataggggtcttggcacttggccactttttgttttgtaac 20692182  T

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