View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_1 (Length: 777)
Name: NF7400_low_1
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 267 - 664
Target Start/End: Complemental strand, 2956800 - 2956403
Alignment:
| Q |
267 |
gatgccctaccattaccaagaatagcaagcaccttcctcgtttgtacttcagcataaagggttatgagccaaataagaaattctccccctagcaatgaat |
366 |
Q |
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| T |
2956800 |
gatgccctaccattaccaagaatagcaagcaccttcctcgtttgtacttcagcataaagggttatgagccaaataagaaattctccccctagcaatgaat |
2956701 |
T |
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| Q |
367 |
gggtcatgaaccaagaaaaagagagcaagagacaaacaagaaattctaccttaacaatgaaaaaggcatgagtcgaacaagaaatgctatacatctaaac |
466 |
Q |
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| T |
2956700 |
gggtcatgaaccaagaaaaagagagcaagagacaaacaagaaattctaccttaacaatgaaaaaggcgtgagtcgaacaagaaatgctctacttctaaac |
2956601 |
T |
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| Q |
467 |
aaaaagtgtaagacgaatgtgaaaatcaacgaatgtacaaaaacaactttgatcatggtcgttatcgccatacatataccctaaaacaatgttaaaggaa |
566 |
Q |
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| T |
2956600 |
aaagagtgcaagccgaatgtgaaaatcaacgaatgtacgaaaacaactttgatcatcgtcgttatcgccatacatataccctaaaacaatgttaaaggaa |
2956501 |
T |
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| Q |
567 |
catatttttcacttacccctaagcacattgagtttgctatctaaatccatagtttagtatttggaagagcacaaaacaagcttgattttcacatctta |
664 |
Q |
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| T |
2956500 |
catatttttcacttacccctaagcacgttgagtttgctatctacatccatagtttagtatttggaagagcacaaaacaagcttgatttgcacatctta |
2956403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 2957058 - 2956863
Alignment:
| Q |
13 |
aatatttttgaaccgcttaggagaggaggtacgttggagggaagaggcaaaaaatgagtacaacttgcaaccatagctttggttgcttgtgatga----a |
108 |
Q |
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| T |
2957058 |
aatatttttgaaccgcttaggagaggaggtacgttggagggaagaggcaaaaaatgagtacaacttgcaaccatagctttggttgcttgtgaggaaacca |
2956959 |
T |
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| Q |
109 |
accacataagaaaaaccaacaatgggaatgggagactttagtggatctgaactcgcgctgcaaaataaaactcaacgacttcatcattaattctgc |
204 |
Q |
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| T |
2956958 |
accacataagaacaaccaacaatgggaatgggagactttagtggacctgaactcgcgctgcaaaataaaactcaacgacttcatcattaattctgc |
2956863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 665 - 760
Target Start/End: Complemental strand, 2955587 - 2955493
Alignment:
| Q |
665 |
acgtaagaaccattcataaggtaagatttagacgttgagatttgaaaaaggaaaatattatagtttctgaaacaataaatcaataccccagttaac |
760 |
Q |
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| T |
2955587 |
acgtaagaac-attcataaggtaagatttagacgttgagatttgacaaaggaaaatattatagtttatgaaacaataaatcaataccccagttaac |
2955493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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