View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_10 (Length: 348)
Name: NF7400_low_10
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 38462855 - 38462539
Alignment:
| Q |
14 |
aaatgaagataaaaatctaaaaatatataattatcacatacagtttatacagagaacaaagctatacagcaaaaacaatctatttgttaagctatgtcaa |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462855 |
aaatgaagataaaaatctagaaatatataattatcacatacagtttatacagagaacaaagctatacagcaaaaacaatctatttgttaagctatgtcaa |
38462756 |
T |
|
| Q |
114 |
gctttataaacatagtgattattagtacacaaaacagtcaaataatagaataaacatgttatatgaccaaaataaaacgaaatttattgataaaacataa |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38462755 |
gctttataaacatagtgattattagcacacaaaacagtcaaataatagaataaacatgttatatgaccaaaataaaacgaaatatattgataaaacataa |
38462656 |
T |
|
| Q |
214 |
caaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtattcatcattccaaactctaagtttgatttaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38462655 |
caaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtattcatcattccaaactctaagtttgatttaat |
38462556 |
T |
|
| Q |
314 |
accataaccatgatttt |
330 |
Q |
| |
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||||||||||||||||| |
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| T |
38462555 |
accataaccatgatttt |
38462539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 52091122 - 52091436
Alignment:
| Q |
17 |
tgaagataaaaatctaaaaatatataattatcacatacagtttatacagagaacaaagctatacagcaaaaacaatctatttgttaagctatgtcaagct |
116 |
Q |
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|||||||||| ||||| ||||||| ||||||| ||| | ||| |||| ||||||||| ||||||||||||||| || ||||| ||||||| |||||| |
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| T |
52091122 |
tgaagataaacatctagaaatataaaattatcgcatgtaatttgtacaaagaacaaagttatacagcaaaaacattcgatttgaaaagctattgcaagct |
52091221 |
T |
|
| Q |
117 |
ttataaacatagtgattattagtacacaaaacagtcaaataatagaat-----aaacatgttatatgaccaaaataaaacgaaatttattgataaaacat |
211 |
Q |
| |
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|||||||||||||| ||||| | | | |||| | ||| |||||||| |||||||||||||||| |||| |||| ||||| | ||||||||| | |
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| T |
52091222 |
ttataaacatagtg---attagcatagagaacaataaaacaatagaataaaggaaacatgttatatgactaaaacaaaaagaaatatgttgataaaatac |
52091318 |
T |
|
| Q |
212 |
aacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcat----tacgtattcatcattccaaactctaagtttga |
307 |
Q |
| |
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||||||||||| |||| | ||||| | ||||||||||| |||||| |||| ||||| | ||||| ||| |||||| |||||||| |||||||| |
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| T |
52091319 |
aacaaattgtgtcaatgacacacaacactgcattactagaggagagcatacaattccaactcattacctacctattcaccattccaa-----aagtttga |
52091413 |
T |
|
| Q |
308 |
tttaataccataaccatgatttt |
330 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
52091414 |
tttaataccataatcatgatttt |
52091436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 97 - 319
Target Start/End: Complemental strand, 48754467 - 48754255
Alignment:
| Q |
97 |
ttgttaagctatgtcaagctttataaacatagtgattattagtacacaaaacagtcaaataatagaataaacatgttatatgaccaaaataaaacgaaat |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| | | | | |||| | ||| ||||||||||| | | ||||| | ||||||| ||||| |
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|
| T |
48754467 |
ttgttaagctatggcaagctttataaacatagtgatta---gcatagagaacaataaaacaatagaataaag--gaaacatgactagaataaaaagaaat |
48754373 |
T |
|
| Q |
197 |
ttattgataaaacataacaaattgtggcaattaaacacagccctgcattactaaaggagaccatagaattctagctcattacgtattcatcattccaaac |
296 |
Q |
| |
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| ||||||||||| |||||||||||||||| | || | | ||||||| |||||||||| |||| ||||| | |||||||| |||||| |||||||| |
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| T |
48754372 |
atgttgataaaacacaacaaattgtggcaatgacacgcgacactgcattgctaaaggagagcatacaattccaactcattacctattcaccattccaa-- |
48754275 |
T |
|
| Q |
297 |
tctaagtttgatttaataccata |
319 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48754274 |
---aagtttgatttaataccata |
48754255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 40733238 - 40733353
Alignment:
| Q |
69 |
acaaagctatacagcaaaaacaat--ctatttgttaagctatgtcaagctttataaacatagtgattattagtacacaaaacagtcaaataatagaataa |
166 |
Q |
| |
|
||||||| |||||||| ||| ||| ||||||||||||| ||| |||||| ||||| ||||||||||| | ||||||| ||||||||| |||||| || |
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|
| T |
40733238 |
acaaagccatacagcataaaaaatatctatttgttaagccatgccaagctgtataagcatagtgatta---gcacacaaaccagtcaaatgatagaaaaa |
40733334 |
T |
|
| Q |
167 |
acatgttatatgaccaaaa |
185 |
Q |
| |
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||||||||||||||||||| |
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| T |
40733335 |
acatgttatatgaccaaaa |
40733353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 48753215 - 48753183
Alignment:
| Q |
142 |
acaaaacagtcaaataatagaataaacatgtta |
174 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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|
| T |
48753215 |
acaaaccagtcaaataatagaataaacatgtta |
48753183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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