View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_low_11 (Length: 336)

Name: NF7400_low_11
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_low_11
NF7400_low_11
[»] chr4 (10 HSPs)
chr4 (17-320)||(24986273-24986576)
chr4 (17-320)||(25000587-25000890)
chr4 (49-317)||(25046708-25046975)
chr4 (56-128)||(25168726-25168798)
chr4 (56-128)||(25252468-25252540)
chr4 (55-137)||(25160164-25160246)
chr4 (54-137)||(25180392-25180475)
chr4 (57-128)||(25189340-25189411)
chr4 (64-146)||(25017633-25017715)
chr4 (64-146)||(25038740-25038822)
[»] chr3 (2 HSPs)
chr3 (54-128)||(9213708-9213782)
chr3 (59-125)||(8091587-8091653)
[»] chr2 (1 HSPs)
chr2 (59-144)||(42167210-42167295)
[»] chr6 (2 HSPs)
chr6 (56-128)||(29406212-29406284)
chr6 (56-104)||(29460043-29460091)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 24986273 - 24986576
Alignment:
Q  17 gtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986273 gtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaag 24986372  T
Q  117 ttcagcatagtccttaaaatcatctctgcaagctcgcgaattacacatgttaatcacttatttagatttaccgcaatctttccctaaaaagtcatacaga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  24986373 ttcagcatagtccttaaaatcatctctgcaagctcgcgaattacacatgttaatcacttatttagatttaccgcaatctttccctaaatagtcataaaga 24986472  T
Q  217 aatagctctagattgaaaattggtgtcactcacacaatccgagggcttaaaaaaccgtcatactcatcctctaaggcttggggaacgtcccaatggaaaa 316  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24986473 aatagctctatattgaaaattggtgtcactcacacaatccgtgggcttaaaaaaccgtcatactcatcctctaaggcttggggaacgtcccaatggaaaa 24986572  T
Q  317 gggt 320  Q
    ||||    
T  24986573 gggt 24986576  T

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Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 25000890 - 25000587
Alignment:
Q  17 gtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  25000890 gtgcaaactttccatatgcataagcattcatgctcacactccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaag 25000791  T
Q  117 ttcagcatagtccttaaaatcatctctgcaagctcgcgaattacacatgttaatcacttatttagatttaccgcaatctttccctaaaaagtcatacaga 216  Q
    ||||||||||||| |||||||||||||||||| |||  ||||||| | |||||||| ||| ||  |||||||| |||||||||||||| | |||||||||    
T  25000790 ttcagcatagtccctaaaatcatctctgcaagatcgtaaattacataagttaatcagttaatttcatttaccgtaatctttccctaaataatcatacaga 25000691  T
Q  217 aatagctctagattgaaaattggtgtcactcacacaatccgagggcttaaaaaaccgtcatactcatcctctaaggcttggggaacgtcccaatggaaaa 316  Q
    ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  25000690 aatagctctagatggaaaattgttgtcactcacacaatgcgacggcttaaaaaaccgtcatactcatcctctaaggcttgaggaacatcccaatggaaaa 25000591  T
Q  317 gggt 320  Q
    ||||    
T  25000590 gggt 25000587  T

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Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 49 - 317
Target Start/End: Original strand, 25046708 - 25046975
Alignment:
Q  49 ctcacactccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgcaag 148  Q
    |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||     
T  25046708 ctcacactccttggttcattcaaagtagtccaacgtttcaccctatcaccaaattccttgaagcaaagatcagcatagtccttaaaatcatttctgcaa- 25046806  T
Q  149 ctcgcgaattacacatgttaatcacttatttagatttaccgcaatctttccctaaaaagtcatacagaaatagctctagattgaaaattggtgtcactca 248  Q
    |||  ||||| || || ||||||| ||| |||||||||| |||| | ||||||||| ||| ||| ||||| || ||||||| ||||||||||||||||||    
T  25046807 ctcatgaatttcaaatattaatcaattaattagatttactgcaaaccttccctaaatagtgataaagaaacagttctagatggaaaattggtgtcactca 25046906  T
Q  249 cacaatccgagggcttaaaaaaccgtcatactcatcctctaaggcttggggaacgtcccaatggaaaag 317  Q
    |||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25046907 cacaatgcgaggactcaaaaaaccgccatactcatcctctaaggcttggggaacgtcccaatggaaaag 25046975  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 25168726 - 25168798
Alignment:
Q  56 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 128  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||||   ||| |||||||||| ||||||||    
T  25168726 tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtc 25168798  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 25252540 - 25252468
Alignment:
Q  56 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 128  Q
    ||||||||||||||||||| ||||||||||| || ||||| ||||||   ||| |||||||||| ||||||||    
T  25252540 tccatggttcattcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtc 25252468  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 25160164 - 25160246
Alignment:
Q  55 ctccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 137  Q
    |||||||| || |||||||||| |||||  || || |||||||||||||||||| | |||||||| |||||||| | ||||||    
T  25160164 ctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatc 25160246  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 25180392 - 25180475
Alignment:
Q  54 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 137  Q
    ||||||||| ||||||||||| ||||||||||| || ||||| ||||||   ||  |||||||||| |||||||| | ||||||    
T  25180392 actccatggctcattcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatc 25180475  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 25189340 - 25189411
Alignment:
Q  57 ccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 128  Q
    ||||||||| || ||||||| ||| |  ||||| ||||| |||||||||||| ||||||| |||||||||||    
T  25189340 ccatggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagcaaagatcagcatagtc 25189411  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 25017633 - 25017715
Alignment:
Q  64 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgca 146  Q
    ||||| || ||||||||||| ||||| |  || |||||||||||| |||| || || |||||||||| |||||||| ||||||    
T  25017633 tcattgaaggtaatccaatgcttcactcggtctccaaattccttgaagcatagctcggcatagtcctgaaaatcatttctgca 25017715  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 25038740 - 25038822
Alignment:
Q  64 tcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctgca 146  Q
    ||||| || ||||||||||| ||||| ||||| || ||||||||| |||| || || |||||||| | |||||||| ||||||    
T  25038740 tcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctgca 25038822  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 9213782 - 9213708
Alignment:
Q  54 actccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 128  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||  |||||||||||||||||||    
T  9213782 actccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtc 9213708  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 8091653 - 8091587
Alignment:
Q  59 atggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcata 125  Q
    ||||||||||||| ||||||||||| || ||||| |||||||||||  || |||| ||||| |||||    
T  8091653 atggttcattcaatgtaatccaatgcttaaccctgtcaccaaattcactgaagcatagttctgcata 8091587  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 42167210 - 42167295
Alignment:
Q  59 atggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatcatctctg 144  Q
    |||| ||||| |||||||||||||  ||||||||||| ||||| || ||| | |||||||| |||||||| | |||||||| ||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctg 42167295  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 29406284 - 29406212
Alignment:
Q  56 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtc 128  Q
    ||||||| || ||||| || |||||||| ||||||||||| || |||||||| || ||||| || ||||||||    
T  29406284 tccatggctcgttcaatgtgatccaatgcttcaccctatctccgaattccttataacaaagctctgcatagtc 29406212  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 29460043 - 29460091
Alignment:
Q  56 tccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattc 104  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||    
T  29460043 tccatggttcattcaatgtgatccaatgctttaccctatctccaaattc 29460091  T

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