View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_16 (Length: 283)
Name: NF7400_low_16
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_16 |
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| [»] scaffold0347 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 13385200 - 13385470
Alignment:
| Q |
5 |
aatgattaatcgaaacggtagcggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcctaacccttaaagttctgtaat-tttgggt |
103 |
Q |
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||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||| |
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| T |
13385200 |
aatgatttatcgaaacggtaacggtggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcctaaccctcaaagctctggaaagtttgggt |
13385299 |
T |
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| Q |
104 |
nnnnnnn-caaaatatccaaaccttcatcttccataacaaatccttccatggttaccattcttttccccttccgacggagctcatttcaaatccgccagc |
202 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||| ||||||||| |||||||||||||| | |
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| T |
13385300 |
aaaaaaagcaaaaaatccaaaccttcatcttcaataacaaatccttccatgtgtacgattcttttcctcttccaacggagctcgtttcaaatccgccatc |
13385399 |
T |
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| Q |
203 |
aataaatccaacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtgacgctcttaaccac |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13385400 |
aataaatccaacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtgatgctcttaaccac |
13385470 |
T |
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Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 35712991 - 35712769
Alignment:
| Q |
8 |
gattaatcgaaacggtagcggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcctaacccttaaagttctgtaa-ttttgggtnnn |
106 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||||||| |
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| T |
35712991 |
gattgatcgaaacggtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcctaaccctcaaagctctggaaattttgggtaaa |
35712892 |
T |
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| Q |
107 |
nnnncaaaatatccaaaccttcatcttccataacaaatccttccatggttaccattcttttccccttccgacggagctcatttcaaatccgccagcaata |
206 |
Q |
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|| || |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
35712891 |
aaaacataaaatccaaaccttcatcttcaataacaaatccttccatggctacgattcttttcctcttccgacggagctcgtttcaaatccgccagcaata |
35712792 |
T |
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| Q |
207 |
aatccaacagcttcgccgccgtc |
229 |
Q |
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||||||||||||||| ||||||| |
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| T |
35712791 |
aatccaacagcttcgtcgccgtc |
35712769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 35712792 - 35712748
Alignment:
| Q |
233 |
aaatacaacagcttcgtcgccgtcgtgacgctcttaaccaccaaa |
277 |
Q |
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|||| ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
35712792 |
aaatccaacagcttcgtcgccgtcgtgatgctctttaccaccaaa |
35712748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 111 - 277
Target Start/End: Complemental strand, 25065749 - 25065583
Alignment:
| Q |
111 |
caaaatatccaaaccttcatcttccataacaaatccttccatggttaccattcttttccccttccgacggagctcatttcaaatccgccagcaataaatc |
210 |
Q |
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||||| ||| |||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||| ||| |||||||||||||||||||| |
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| T |
25065749 |
caaaaaatctaaaccttcatcttcaataacaaatccttccatggctatgattcttttcctcttccgacggagctcgtttaaaatccgccagcaataaatc |
25065650 |
T |
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| Q |
211 |
caacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtgacgctcttaaccaccaaa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
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| T |
25065649 |
caacagcttcgccgccgtcaacaaatacaacagctttgccgccgtcgtgatgctcttaaccaccaaa |
25065583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0347 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0347
Description:
Target: scaffold0347; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 111 - 277
Target Start/End: Complemental strand, 14404 - 14238
Alignment:
| Q |
111 |
caaaatatccaaaccttcatcttccataacaaatccttccatggttaccattcttttccccttccgacggagctcatttcaaatccgccagcaataaatc |
210 |
Q |
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||||| |||||||||||||||||| | ||||||||||||||||| ||| |||||||||| ||||| | |||||| ||| ||||||||||||||||||| |
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| T |
14404 |
caaaaaatccaaaccttcatcttcaagaacaaatccttccatggctacgattcttttcctcttccaatagagctcgtttataatccgccagcaataaatc |
14305 |
T |
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| Q |
211 |
caacagcttcgccgccgtcaacaaatacaacagcttcgtcgccgtcgtgacgctcttaaccaccaaa |
277 |
Q |
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| T |
14304 |
caacagctccgccgccgtcaacaaataccacagcttcgtcgccgtcgtgatgctcttaaccaccaaa |
14238 |
T |
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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 23485567 - 23485491
Alignment:
| Q |
16 |
gaaacggtagcggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcctaacccttaaagttctg |
92 |
Q |
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| T |
23485567 |
gaaacagtaacggcggtgttacgaaaagtaacacaggtgggaaacaagattcacacctcctaaccctcaaagctctg |
23485491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 199750 - 199698
Alignment:
| Q |
40 |
aaagtaacacaggtgggaaacaagattcacacctcctaacccttaaagttctg |
92 |
Q |
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|||||||||||| | | ||| |||||||||||||||||||||| |||| |||| |
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| T |
199750 |
aaagtaacacagctagaaaataagattcacacctcctaaccctcaaagctctg |
199698 |
T |
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