View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_low_17 (Length: 278)

Name: NF7400_low_17
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_low_17
NF7400_low_17
[»] chr2 (2 HSPs)
chr2 (54-99)||(20372075-20372120)
chr2 (228-260)||(20621607-20621639)
[»] chr1 (4 HSPs)
chr1 (54-99)||(23950386-23950431)
chr1 (54-99)||(28993302-28993347)
chr1 (58-95)||(13806019-13806056)
chr1 (228-260)||(3432834-3432866)
[»] scaffold0632 (2 HSPs)
scaffold0632 (54-99)||(4657-4702)
scaffold0632 (228-260)||(4479-4511)
[»] chr6 (3 HSPs)
chr6 (54-99)||(20532435-20532480)
chr6 (228-260)||(15391555-15391587)
chr6 (228-260)||(13825792-13825824)
[»] scaffold0156 (1 HSPs)
scaffold0156 (228-260)||(35300-35332)
[»] chr5 (8 HSPs)
chr5 (228-260)||(31410979-31411011)
chr5 (228-260)||(1728103-1728135)
chr5 (228-260)||(17638328-17638360)
chr5 (228-260)||(20372857-20372889)
chr5 (228-260)||(20398579-20398611)
chr5 (228-260)||(23350020-23350052)
chr5 (228-260)||(29186222-29186254)
chr5 (228-260)||(31421878-31421910)
[»] scaffold0315 (1 HSPs)
scaffold0315 (228-260)||(10600-10632)
[»] scaffold0027 (1 HSPs)
scaffold0027 (228-260)||(65648-65680)
[»] chr8 (3 HSPs)
chr8 (228-260)||(4839726-4839758)
chr8 (228-260)||(39837506-39837538)
chr8 (228-260)||(39845549-39845581)
[»] chr7 (2 HSPs)
chr7 (228-260)||(13831589-13831621)
chr7 (228-260)||(13839620-13839652)
[»] chr4 (1 HSPs)
chr4 (228-260)||(4523624-4523656)
[»] chr3 (1 HSPs)
chr3 (228-260)||(8154588-8154620)


Alignment Details
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 20372075 - 20372120
Alignment:
Q  54 aaatggacccttgctgaaattttcagacttattgacttcattggac 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  20372075 aaatggacccttgctgaaattttcggacttattgacttcattggac 20372120  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 20621639 - 20621607
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||| ||||||||||||||    
T  20621639 gaggtacttcaaagtaacatctttgtcgaaatt 20621607  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 23950431 - 23950386
Alignment:
Q  54 aaatggacccttgctgaaattttcagacttattgacttcattggac 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  23950431 aaatggacccttgctgaaattttcggacttattgacttcattggac 23950386  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 28993302 - 28993347
Alignment:
Q  54 aaatggacccttgctgaaattttcagacttattgacttcattggac 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  28993302 aaatggacccttgctgaaattttcggacttattgacttcattggac 28993347  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 13806019 - 13806056
Alignment:
Q  58 ggacccttgctgaaattttcagacttattgacttcatt 95  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  13806019 ggacccttgctgaacttttcggacttattgacttcatt 13806056  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 3432834 - 3432866
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  3432834 gaggtacttcaaagtaacctctttgtcaaaatt 3432866  T

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Target: scaffold0632 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 4702 - 4657
Alignment:
Q  54 aaatggacccttgctgaaattttcagacttattgacttcattggac 99  Q
    |||||||||||||||||||||||  |||||||||||||||||||||    
T  4702 aaatggacccttgctgaaattttttgacttattgacttcattggac 4657  T

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Target: scaffold0632; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 4511 - 4479
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||| ||||||||||    
T  4511 gaggtacttcaaagtaacctctctgtcgaaatt 4479  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 20532435 - 20532480
Alignment:
Q  54 aaatggacccttgctgaaattttcagacttattgacttcattggac 99  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  20532435 aaatggacccttgctgaaattttcggacttattgacttcgttggac 20532480  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 15391555 - 15391587
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||||||||||||||    
T  15391555 gaggtacttcaaagtaacctctttgtcgaaatt 15391587  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 13825824 - 13825792
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||| ||||||||||    
T  13825824 gaggtacttcaaagtaacctctctgtcgaaatt 13825792  T

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Target: scaffold0156 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 35300 - 35332
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||||||||||||||    
T  35300 gaggtacttcaaagtaacctctttgtcgaaatt 35332  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 31411011 - 31410979
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||||||||||||||    
T  31411011 gaggtacttcaaagtaacctctttgtcgaaatt 31410979  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 1728103 - 1728135
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  1728103 gaggtacttcaaagtaacctctttgtcaaaatt 1728135  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 17638360 - 17638328
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||| ||||||||||    
T  17638360 gaggtacttcaaagtaacctctctgtcgaaatt 17638328  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 20372857 - 20372889
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||| ||||||||||    
T  20372857 gaggtacttcaaagtaacctctctgtcgaaatt 20372889  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 20398579 - 20398611
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||||||| ||||||||||    
T  20398579 gaggtacttcaaagtaacctctctgtcgaaatt 20398611  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 23350020 - 23350052
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||| |||||||    
T  23350020 gaggtacttcaaagtaacctctttgccgaaatt 23350052  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 29186222 - 29186254
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||| ||||||||||||||||||||||||||||    
T  29186222 gaggcacttcaaagtaacctctttgtcgaaatt 29186254  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 31421910 - 31421878
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||| ||||||||||||||    
T  31421910 gaggtacttcaaagtaacatctttgtcgaaatt 31421878  T

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Target: scaffold0315 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 10600 - 10632
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||| |||||||    
T  10600 gaggtacttcaaagtaacctctttgccgaaatt 10632  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 65648 - 65680
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||| ||||||||||||||    
T  65648 gaggtacttcaaagtaacatctttgtcgaaatt 65680  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 4839726 - 4839758
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    |||||||||||||||||| ||||||||||||||    
T  4839726 gaggtacttcaaagtaacttctttgtcgaaatt 4839758  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 39837506 - 39837538
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  39837506 gaggtacttcaaagtaacctctttgtcaaaatt 39837538  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 39845549 - 39845581
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  39845549 gaggtacttcaaagtaacctctttgtcaaaatt 39845581  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 13831621 - 13831589
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  13831621 gaggtacttcaaagtaacctctttgtcaaaatt 13831589  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 13839652 - 13839620
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  13839652 gaggtacttcaaagtaacctctttgtcaaaatt 13839620  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 4523624 - 4523656
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  4523624 gaggtacttcaaagtaacctctttgtcaaaatt 4523656  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 8154588 - 8154620
Alignment:
Q  228 gaggtacttcaaagtaacctctttgtcgaaatt 260  Q
    ||||||||||||||||||||||||||| |||||    
T  8154588 gaggtacttcaaagtaacctctttgtcaaaatt 8154620  T

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