View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_19 (Length: 264)
Name: NF7400_low_19
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_19 |
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| [»] scaffold0153 (4 HSPs) |
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Alignment Details
Target: scaffold0153 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 6128 - 6007
Alignment:
| Q |
135 |
agtgagagtgaaagaaagtaacgaaactgaagcattagattatcgcagatatcagcaattttgtcgtaagatttggattacaatgcggttttcactgctg |
234 |
Q |
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| T |
6128 |
agtgagagtgaaagaaagtaacgaaactgaagcattagattatcgcagatatcagcaattttgtcgtaagatttggattacaatgcggttttcactgctg |
6029 |
T |
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| Q |
235 |
ataaatccattacgttcttctc |
256 |
Q |
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| T |
6028 |
ataaatccattacgttcttctc |
6007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 13148 - 13027
Alignment:
| Q |
135 |
agtgagagtgaaagaaagtaacgaaactgaagcattagattatcgcagatatcagcaattttgtcgtaagatttggattacaatgcggttttcactgctg |
234 |
Q |
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| T |
13148 |
agtgagagtgaaagaaagtaacgaaactgaagcattagattatcgcagatatcagcaattttgtcgtaagatttggattacaatgcggttttcactgctg |
13049 |
T |
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| Q |
235 |
ataaatccattacgttcttctc |
256 |
Q |
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| T |
13048 |
ataaatccattacgttcttctc |
13027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6197 - 6122
Alignment:
| Q |
1 |
gaagtgagccagaagatgaacagcgtagggccattcgtcgtgaaaagcaacaccgttggcagcaacctgagtgaga |
76 |
Q |
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| T |
6197 |
gaagtgagccagaagatgaacagcgtagggccattcgtcgtgaaaagcaacaccgttggcagcaacctgagtgaga |
6122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13217 - 13142
Alignment:
| Q |
1 |
gaagtgagccagaagatgaacagcgtagggccattcgtcgtgaaaagcaacaccgttggcagcaacctgagtgaga |
76 |
Q |
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| T |
13217 |
gaagtgagccagaagatgaacagcgtagggccattcgtcgtgaaaagcaacaccgttggcagcaacctgagtgaga |
13142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 256
Target Start/End: Complemental strand, 1160367 - 1160110
Alignment:
| Q |
5 |
tgagccagaagatgaacagcgtagggccattcgtcgtgaaaagcaacaccgttggcagcaacctgagtgagaattaacaataaagtaagctacgaaatac |
104 |
Q |
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| T |
1160367 |
tgagcgagaagatgaacggagtagggccattcatcgtgaaacgcaacaccgtcggcagcaacctgagtaagtatcaacaatcaagtaagcaacgaattac |
1160268 |
T |
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| Q |
105 |
aca--caaaaagaaaa------------ccctaagtattataacagtgagagtgaaagaaagtaacgaaactgaagcattagattatcgcagatatcagc |
190 |
Q |
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||| |||||| |||| ||||||| | |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
1160267 |
acaaacaaaaaaaaaaaaaaaaaaaaagccctaagga----aacagtgagagtgaaagaaa----cgaacctgaagcatgagattatcgcagatatcagc |
1160176 |
T |
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| Q |
191 |
aattttgtcgtaagatttggattacaatgcggttttcactgctgataaatccattacgttcttctc |
256 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1160175 |
aattttgtcgtaagatttggattccaatgcggttttcactgctgataaatccattacgttcttctc |
1160110 |
T |
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