View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_low_23 (Length: 250)

Name: NF7400_low_23
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_low_23
NF7400_low_23
[»] chr6 (7 HSPs)
chr6 (18-118)||(22824236-22824336)
chr6 (19-118)||(28321741-28321840)
chr6 (54-118)||(16272644-16272708)
chr6 (214-244)||(16272517-16272547)
chr6 (19-57)||(16273002-16273040)
chr6 (214-244)||(22824110-22824140)
chr6 (214-244)||(28321935-28321965)
[»] chr8 (2 HSPs)
chr8 (18-118)||(31972832-31972932)
chr8 (214-244)||(31972706-31972736)
[»] chr1 (2 HSPs)
chr1 (18-118)||(29995602-29995702)
chr1 (214-244)||(29995476-29995506)
[»] scaffold0061 (2 HSPs)
scaffold0061 (18-118)||(41314-41414)
scaffold0061 (214-244)||(41509-41539)
[»] chr3 (5 HSPs)
chr3 (18-118)||(42394009-42394109)
chr3 (19-118)||(10024787-10024886)
chr3 (18-115)||(32967663-32967760)
chr3 (214-244)||(32967532-32967562)
chr3 (214-244)||(42393885-42393915)
[»] scaffold0038 (2 HSPs)
scaffold0038 (18-117)||(113065-113164)
scaffold0038 (214-244)||(113260-113290)
[»] scaffold0017 (2 HSPs)
scaffold0017 (18-117)||(157372-157471)
scaffold0017 (214-244)||(157246-157276)
[»] chr2 (4 HSPs)
chr2 (18-117)||(19047567-19047666)
chr2 (18-117)||(39832663-39832762)
chr2 (214-244)||(19047762-19047792)
chr2 (214-244)||(39832537-39832567)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 22824336 - 22824236
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22824336 gaatcatagggtcgctcttgttgatattaaattaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 22824237  T
Q  118 g 118  Q
    |    
T  22824236 g 22824236  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 28321741 - 28321840
Alignment:
Q  19 aatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaacag 118  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28321741 aatcatagggttgctcttgttgatattaaattaaatactaattaaaagaaattttctaatatacatgttcttgaggactttataagccttatttgaacag 28321840  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 16272708 - 16272644
Alignment:
Q  54 tactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaacag 118  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  16272708 tactaattaaaagaaattttctaatatacatgtttttgaggactttataagccttatttgaacag 16272644  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 16272547 - 16272517
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  16272547 ctctttcaagcaagagaagtcaaacacgaaa 16272517  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 16273040 - 16273002
Alignment:
Q  19 aatcatagggtcgctcttgttgatattaaactaaatact 57  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  16273040 aatcatagggttgctcttgttgatattaaattaaatact 16273002  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 22824140 - 22824110
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  22824140 ctctttcaagcaagagaagtcaaacacgaaa 22824110  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 28321935 - 28321965
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  28321935 ctctttcaagcaagagaagtcaaacacgaaa 28321965  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 31972932 - 31972832
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  31972932 gaatcatagggtcgctcttgttgatattaaattaaatactaattaaaagaaattttctaatatacatgttcttgaggactttataagccttatttgaaca 31972833  T
Q  118 g 118  Q
    |    
T  31972832 g 31972832  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 31972736 - 31972706
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  31972736 ctctttcaagcaagagaagtcaaacacgaaa 31972706  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 29995702 - 29995602
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  29995702 gaatcatagggttgctcttgttgatattaaattaaatactaattaaaagaaattttctaatatacatgttcttgaggactttataagccttatttgaaca 29995603  T
Q  118 g 118  Q
    |    
T  29995602 g 29995602  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 29995506 - 29995476
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  29995506 ctctttcaagcaagagaagtcaaacacgaaa 29995476  T

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Target: scaffold0061 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 41314 - 41414
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||||    
T  41314 gaatcatagggtcgctcttgttgatattaaattaaatactaattaaaagaaattttgtaatgtacatgttcttgaggactttataagccttatttgaaca 41413  T
Q  118 g 118  Q
    |    
T  41414 g 41414  T

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Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 41509 - 41539
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  41509 ctctttcaagcaagagaagtcaaacacgaaa 41539  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 42394109 - 42394009
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  42394109 gaatcatagggttgctcttgttgatattaaattaaatactaattaaaagaaattttctaatatacatgttcttgaagactttataagccttatttgaaca 42394010  T
Q  118 g 118  Q
    |    
T  42394009 g 42394009  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 10024787 - 10024886
Alignment:
Q  19 aatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaacag 118  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  10024787 aatcatagggttgctcttgttgatattaaattaaatactaattaaaagaaattttctaatgtacatgttcttgaggactttataagccttgtttgaacag 10024886  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 32967760 - 32967663
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaa 115  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||    
T  32967760 gaatcatagggtcgctcttgtggatattaaattaaatactaattaaaagaaattttcaaatatacatgttcttgaagactttataagccttatttgaa 32967663  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 32967562 - 32967532
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  32967562 ctctttcaagcaagagaagtcaaacacgaaa 32967532  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 42393915 - 42393885
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  42393915 ctctttcaagcaagagaagtcaaacacgaaa 42393885  T

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Target: scaffold0038 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 113065 - 113164
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  113065 gaatcatagggttgctcttgttgatattaaattaaatactaattaaaggaaattttctaatatacatgttcttgaggactttataagccttatttgaaca 113164  T

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Target: scaffold0038; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 113260 - 113290
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  113260 ctctttcaagcaagagaagtcaaacacgaaa 113290  T

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Target: scaffold0017 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 157471 - 157372
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  157471 gaatcatagggttgctcttgttgatattaaattaaatactaattaaaggaaattttctaatatacatgttcttgaggactttataagccttatttgaaca 157372  T

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Target: scaffold0017; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 157276 - 157246
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  157276 ctctttcaagcaagagaagtcaaacacgaaa 157246  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 19047567 - 19047666
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  19047567 gaatcatagggttgctcttgttgatattaaattaaatactaattaaaggaaattttctaatatacatgttcttgaggactttataagccttatttgaaca 19047666  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 39832762 - 39832663
Alignment:
Q  18 gaatcatagggtcgctcttgttgatattaaactaaatactaattaaaagaagttttctaatatacatgttcttgaggactttctaagccttatttgaaca 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  39832762 gaatcatagggttgctcttgttgatattaaattaaatactaattaaaggaaattttctaatatacatgttcttgaggactttataagccttatttgaaca 39832663  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 19047762 - 19047792
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  19047762 ctctttcaagcaagagaagtcaaacacgaaa 19047792  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 39832567 - 39832537
Alignment:
Q  214 ctctttcaagcaagagaagtcaaacacgaaa 244  Q
    |||||||||||||||||||||||||||||||    
T  39832567 ctctttcaagcaagagaagtcaaacacgaaa 39832537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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