View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_25 (Length: 246)
Name: NF7400_low_25
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_25 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 12977 - 12822
Alignment:
| Q |
4 |
aacaattcaataacttcccgactatttcctcgatccacaaaaccttggactaaagcagtccaagagacaatatcttgttgaggtatttcatcaaatatct |
103 |
Q |
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| T |
12977 |
aacaattcaataacttcccgactatttcctctatccacaaaaccttggactaaagcagtccaagagacaatatcttgttgaggtatttcatcaaatatcc |
12878 |
T |
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| Q |
104 |
agcgcacataagtgtgattgctacaacttacataaatgtttattagagaaacccaa |
159 |
Q |
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| T |
12877 |
agcgcacataagtgtgattgctacaacttacataaatgtttattagagaaacccaa |
12822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 12791 - 12740
Alignment:
| Q |
176 |
tccttgtttatagcctctctcaaaatgcaattacccaacagtgaaaaatatt |
227 |
Q |
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| T |
12791 |
tccttgtttatagcctctctcaaaatgcaatcacccaacagtgaaaaatatt |
12740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 42933794 - 42933949
Alignment:
| Q |
4 |
aacaattcaataacttcccgactatttcctcgatccacaaaaccttggactaaagcagtccaagagacaatatcttgttgaggtatttcatcaaatatct |
103 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933794 |
aacaattcaataacttcccgactatttcctctatccacaaaaccttggactaaagcagtccaagagacaatatcttgttgaggtatttcatcaaatatcc |
42933893 |
T |
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| Q |
104 |
agcgcacataagtgtgattgctacaacttacataaatgtttattagagaaacccaa |
159 |
Q |
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| T |
42933894 |
agcgcacataagtgtgattgctacaacttacataaatgtttattagagaaacccaa |
42933949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 42933980 - 42934031
Alignment:
| Q |
176 |
tccttgtttatagcctctctcaaaatgcaattacccaacagtgaaaaatatt |
227 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42933980 |
tccttgtttatagcctctctcaaaatgcaatcacccaacagtgaaaaatatt |
42934031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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