View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_28 (Length: 242)
Name: NF7400_low_28
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 41077720 - 41077590
Alignment:
| Q |
106 |
tggttaaactattgatcaagtctaaagttaatggtttaactttttctaacgattactatctatgtagctttcaaccactcagattcttatgatggtttta |
205 |
Q |
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| T |
41077720 |
tggttaaactattgatcaagtctaaagttaatggtttaattttttctaacgattactatctatgtagctttcaaccactcagattcttatgatggtttta |
41077621 |
T |
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| Q |
206 |
catcctagttgattaccattttgatgtccat |
236 |
Q |
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| T |
41077620 |
catcttagttgattaccattttgatttccat |
41077590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41078783 - 41078704
Alignment:
| Q |
1 |
taattgagggaccaacggatctaataagcctaaaaaa--tactagaataactattgatagaaagatcgaattttgtcaaa |
78 |
Q |
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| T |
41078783 |
taattgagggaccagcggatctaataagcctaaaaaaaatactagaataactatttatagaaagatcgaattttgtcaaa |
41078704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 41078691 - 41078655
Alignment:
| Q |
72 |
tgtcaaattatataagaaagttataggtgatgagtgg |
108 |
Q |
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| T |
41078691 |
tgtcaaattatataagaaagttataggtgatgagtgg |
41078655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41874060 - 41874107
Alignment:
| Q |
1 |
taattgagggaccaacggatctaataagcctaaaaaatactagaataa |
48 |
Q |
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| T |
41874060 |
taattgagggaccaatggatctaataagcctaaaataaattagaataa |
41874107 |
T |
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