View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_low_30 (Length: 241)

Name: NF7400_low_30
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_low_30
NF7400_low_30
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-227)||(433900-434114)
[»] chr3 (15 HSPs)
chr3 (105-227)||(45249384-45249506)
chr3 (99-227)||(48993328-48993455)
chr3 (109-227)||(8108187-8108304)
chr3 (106-227)||(53466253-53466373)
chr3 (128-227)||(6488783-6488882)
chr3 (105-179)||(31580366-31580440)
chr3 (109-201)||(23919117-23919209)
chr3 (105-218)||(27213969-27214082)
chr3 (107-219)||(44455062-44455174)
chr3 (106-226)||(23629282-23629400)
chr3 (149-202)||(23631304-23631357)
chr3 (113-201)||(35044125-35044213)
chr3 (148-219)||(26043418-26043489)
chr3 (110-141)||(45249339-45249370)
chr3 (162-226)||(53199782-53199846)
[»] chr4 (30 HSPs)
chr4 (111-227)||(41621889-41622005)
chr4 (105-227)||(52270435-52270557)
chr4 (105-217)||(41735397-41735509)
chr4 (105-227)||(2168424-2168546)
chr4 (100-218)||(9093614-9093732)
chr4 (105-229)||(46737403-46737528)
chr4 (109-218)||(3121033-3121142)
chr4 (105-227)||(35808659-35808783)
chr4 (105-218)||(37624798-37624911)
chr4 (107-227)||(31861575-31861695)
chr4 (132-218)||(43142052-43142135)
chr4 (109-217)||(43594954-43595061)
chr4 (106-219)||(29927278-29927391)
chr4 (125-217)||(26876113-26876205)
chr4 (105-212)||(42183368-42183475)
chr4 (109-227)||(16958386-16958503)
chr4 (125-227)||(25231530-25231632)
chr4 (105-227)||(8680528-8680649)
chr4 (124-227)||(55969892-55969995)
chr4 (107-213)||(24504648-24504754)
chr4 (132-217)||(10097954-10098039)
chr4 (107-174)||(43432342-43432409)
chr4 (156-226)||(56040355-56040425)
chr4 (113-186)||(29235594-29235667)
chr4 (134-202)||(4512803-4512871)
chr4 (148-202)||(43771854-43771908)
chr4 (113-183)||(49013784-49013853)
chr4 (113-186)||(4066373-4066446)
chr4 (121-174)||(6917298-6917351)
chr4 (105-137)||(3641920-3641952)
[»] chr2 (21 HSPs)
chr2 (107-227)||(36903935-36904055)
chr2 (106-201)||(19955050-19955145)
chr2 (99-217)||(38402502-38402620)
chr2 (148-227)||(9047624-9047703)
chr2 (105-218)||(223924-224037)
chr2 (105-212)||(39791503-39791610)
chr2 (133-227)||(4428778-4428872)
chr2 (107-217)||(13490814-13490924)
chr2 (105-202)||(2854409-2854506)
chr2 (113-201)||(15335813-15335901)
chr2 (103-185)||(13530610-13530692)
chr2 (127-196)||(3002420-3002489)
chr2 (107-198)||(1575035-1575126)
chr2 (105-202)||(9431444-9431542)
chr2 (132-226)||(14812300-14812394)
chr2 (132-217)||(41283336-41283420)
chr2 (111-174)||(14306173-14306236)
chr2 (107-217)||(6563052-6563162)
chr2 (105-146)||(248086-248127)
chr2 (113-182)||(16471195-16471264)
chr2 (129-173)||(31608158-31608202)
[»] chr8 (18 HSPs)
chr8 (105-203)||(24999437-24999535)
chr8 (106-218)||(38573263-38573375)
chr8 (105-227)||(13018459-13018581)
chr8 (105-218)||(23518170-23518283)
chr8 (105-227)||(36642724-36642846)
chr8 (150-227)||(7642615-7642692)
chr8 (105-202)||(13177804-13177901)
chr8 (100-218)||(11611527-11611646)
chr8 (136-212)||(12978247-12978323)
chr8 (124-186)||(1090015-1090077)
chr8 (100-202)||(12763309-12763411)
chr8 (106-162)||(44395633-44395689)
chr8 (113-174)||(45079361-45079422)
chr8 (110-141)||(33015567-33015598)
chr8 (113-198)||(10328648-10328733)
chr8 (110-143)||(12978350-12978383)
chr8 (132-217)||(42446555-42446640)
chr8 (160-192)||(37125567-37125599)
[»] chr7 (22 HSPs)
chr7 (105-227)||(28514609-28514731)
chr7 (106-227)||(31191345-31191465)
chr7 (105-218)||(10624917-10625030)
chr7 (105-227)||(28646639-28646761)
chr7 (105-227)||(45618471-45618593)
chr7 (107-227)||(48488443-48488563)
chr7 (148-227)||(37869743-37869822)
chr7 (143-219)||(1111731-1111807)
chr7 (105-227)||(23247752-23247873)
chr7 (106-227)||(5081786-5081907)
chr7 (103-212)||(25119981-25120090)
chr7 (103-211)||(40198999-40199107)
chr7 (105-212)||(19086276-19086383)
chr7 (105-217)||(45662269-45662379)
chr7 (129-203)||(8584122-8584196)
chr7 (113-185)||(34823562-34823634)
chr7 (117-218)||(29648573-29648674)
chr7 (143-201)||(43803312-43803370)
chr7 (134-219)||(3181215-3181300)
chr7 (105-178)||(19677066-19677139)
chr7 (131-219)||(29414631-29414719)
chr7 (131-179)||(48339146-48339194)
[»] chr6 (6 HSPs)
chr6 (105-227)||(6100688-6100810)
chr6 (90-215)||(40002-40128)
chr6 (98-212)||(33134227-33134342)
chr6 (105-218)||(32147902-32148015)
chr6 (131-219)||(7984566-7984654)
chr6 (125-185)||(31631891-31631951)
[»] chr1 (20 HSPs)
chr1 (105-216)||(894750-894861)
chr1 (105-227)||(42410220-42410342)
chr1 (111-227)||(36563830-36563944)
chr1 (126-217)||(38067746-38067837)
chr1 (113-218)||(3831415-3831519)
chr1 (152-227)||(1795847-1795922)
chr1 (106-184)||(32213482-32213563)
chr1 (156-201)||(51049842-51049887)
chr1 (129-217)||(5892700-5892788)
chr1 (103-217)||(11818130-11818244)
chr1 (113-199)||(21779973-21780059)
chr1 (157-197)||(894651-894691)
chr1 (105-185)||(34038861-34038941)
chr1 (11-55)||(50362309-50362353)
chr1 (111-185)||(35365592-35365666)
chr1 (106-186)||(13029061-13029140)
chr1 (164-218)||(23459474-23459528)
chr1 (150-227)||(13984268-13984345)
chr1 (105-178)||(26829563-26829636)
chr1 (150-227)||(38788691-38788768)
[»] chr5 (21 HSPs)
chr5 (105-203)||(34338876-34338974)
chr5 (105-217)||(15476858-15476970)
chr5 (105-227)||(25713323-25713445)
chr5 (105-215)||(32292254-32292364)
chr5 (105-200)||(26362299-26362394)
chr5 (113-199)||(20894227-20894313)
chr5 (105-174)||(10285333-10285401)
chr5 (105-202)||(36487184-36487281)
chr5 (105-186)||(37447299-37447380)
chr5 (125-212)||(1088250-1088337)
chr5 (106-186)||(565566-565646)
chr5 (113-201)||(16054421-16054509)
chr5 (136-202)||(29045381-29045447)
chr5 (105-157)||(22088522-22088574)
chr5 (125-201)||(40220354-40220430)
chr5 (107-174)||(1056557-1056624)
chr5 (113-174)||(20920888-20920949)
chr5 (124-203)||(14662970-14663049)
chr5 (105-185)||(31006302-31006384)
chr5 (125-219)||(3135632-3135726)
chr5 (100-144)||(38083404-38083448)
[»] scaffold0004 (1 HSPs)
scaffold0004 (113-186)||(97847-97920)


Alignment Details
Target: scaffold0002 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 434114 - 433900
Alignment:
Q  11 cagagaagcaggatatcaaaactatagtttgtaatgcttagtaagagagaagatgttggattaacaactaagtagcataactgtatttatttatggtctt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  434114 cagaaaagcaggatatcaaaactatagtttgtaatgcttagtaagagagaagatgttggattaacaactaagtagcataactgtatttatttatggtctt 434015  T
Q  111 gttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaat 210  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  434014 gttaacaagtaccttaagggcattgtttaagaaacccacaaaaaaaaattatgtcttgaaaatataagtcaaacacttgttaaagtcataa--ttacaat 433917  T
Q  211 tttcaatgtgaaagttg 227  Q
    || ||||  ||||||||    
T  433916 ttacaatacgaaagttg 433900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 45249506 - 45249384
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||     
T  45249506 ggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacatttgttaaagtcataaccg 45249407  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    |||||||| |||||  |||||||    
T  45249406 tacaatttccaatgcaaaagttg 45249384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 48993328 - 48993455
Alignment:
Q  99 atttatggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtca 198  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||| |||| |||| | |||||||||||||||||||| |||| |||| |||||||||||||    
T  48993328 atttagggtcttgctaacaagtgccctaagggcattgtttaaggaacccacaagaggaaattatgtcttgaaaataaaagtcaaacccttgttaaagtca 48993427  T
Q  199 taaccttacaattttcaatgtgaaagttg 227  Q
     || | |||||||| |||||  |||||||    
T  48993428 caa-cgtacaatttccaatgaaaaagttg 48993455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 8108187 - 8108304
Alignment:
Q  109 ttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttaca 208  Q
    |||| |||||||||| ||||| ||||||||||| |||  | |||||||||||||| |||||||||||||| | |||||||||| |||| |||||| ||||    
T  8108187 ttgtgaacaagtgccctaaggacattgtttaaggaacacaaaaaaagaaattatgccttgaaaatataag-tcaacacttgttgaagttataaccgtaca 8108285  T
Q  209 attttcaatgtgaaagttg 227  Q
    |||| |||||  |||||||    
T  8108286 atttccaatgcaaaagttg 8108304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 53466373 - 53466253
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctt 205  Q
    |||| |||||||||||| |||| ||||||||||||| |||| | ||||||||||||||  || ||||||||||| |||||||| || |||| |||| | |    
T  53466373 gtctagttaacaagtgc-ttaatggcattgtttaaggaacctataaaaagaaattatgctttaaaaatataagtcaaacacttattgaagttataatcgt 53466275  T
Q  206 acaattttcaatgtgaaagttg 227  Q
    |||||||||||||  |||||||    
T  53466274 acaattttcaatgcaaaagttg 53466253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 6488783 - 6488882
Alignment:
Q  128 gggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    |||||||||||||| |||| ||||||||| ||||| |||| |||||| ||||  ||||||||||||||||||||   ||||||||||||||  |||||||    
T  6488783 gggcattgtttaaggaacctacaaaaagagattatatcttaaaaatacaagtacaacacttgttaaagtcataatagtacaattttcaatgcaaaagttg 6488882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 31580440 - 31580366
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagt 179  Q
    ||||||||||||||||| |||||||| |||||||||  |||| ||||||| ||||||||| ||||||||||||||    
T  31580440 ggtcttgttaacaagtgtcttaagggtattgtttaaagaacccacaaaaaaaaattatgttttgaaaatataagt 31580366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 23919117 - 23919209
Alignment:
Q  109 ttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    ||||||||||||||| ||| | | ||||||||| |||| | ||||||||||||||||| ||||||||| || ||||||||||| |||| ||||    
T  23919117 ttgttaacaagtgccctaaagacgttgtttaaggaacccataaaaagaaattatgtctcgaaaatatatgtcaaacacttgttgaagttataa 23919209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 27214082 - 27213969
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    |||||||||||||||||   ||||| ||||||||||| |||  ||||||||||| | |||||| |||||| |||| |||||  ||| |||||||||||      
T  27214082 ggtcttgttaacaagtgttctaaggacattgtttaaggaacacacaaaaagaaactttgtcttaaaaatacaagtcaaacatatgtaaaagtcataacta 27213983  T
Q  205 tacaattttcaatg 218  Q
    |||||||| |||||    
T  27213982 tacaatttccaatg 27213969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 44455062 - 44455174
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    ||||| |||||||||   ||||| | |||||||||||||  ||| ||||||||| ||||||||||||| |||| ||||||   | |||||||||||  ||    
T  44455062 tcttgctaacaagtgttctaaggacgttgtttaagaaactcacagaaagaaattttgtcttgaaaatacaagtcaaacacacataaaagtcataactata 44455161  T
Q  207 caattttcaatgt 219  Q
    |||||||||||||    
T  44455162 caattttcaatgt 44455174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 23629400 - 23629282
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctt 205  Q
    |||||| |||||| | | ||||| |||||||||||||||||  |||||  |||||  || ||||||||| || | |||||| ||| ||||||||||   |    
T  23629400 gtcttgctaacaaattctttaagcgcattgtttaagaaaccttcaaaataaaatt--gttttgaaaatacaaatcaaacacatgtaaaagtcataattat 23629303  T
Q  206 acaattttcaatgtgaaagtt 226  Q
    |||||||||||||| ||||||    
T  23629302 acaattttcaatgtaaaagtt 23629282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 23631304 - 23631357
Alignment:
Q  149 caaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    |||||||||||| | ||||||||||| ||||||||||| ||| |||||||||||    
T  23631304 caaaaagaaattttatcttgaaaatacaagttaaacacgtgtaaaagtcataac 23631357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 35044213 - 35044125
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    ||||||||||| |||||||||||||||||||| | |  | |||||||| | |||||||||  ||||| |||||| ||| ||||| ||||    
T  35044213 taacaagtgccctaagggcattgtttaagaaatccattataagaaattttatcttgaaaacctaagtcaaacacatgtgaaagtaataa 35044125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 26043489 - 26043418
Alignment:
Q  148 acaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgt 219  Q
    |||||||||  || ||||||||||||||||||||||||| ||| |||| ||| ||   ||||||||||||||    
T  26043489 acaaaaagaggttttgtcttgaaaatataagttaaacacatgtaaaagacatgactacacaattttcaatgt 26043418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 141
Target Start/End: Original strand, 45249339 - 45249370
Alignment:
Q  110 tgttaacaagtgccttaagggcattgtttaag 141  Q
    ||||||||||||||||||||||||||||||||    
T  45249339 tgttaacaagtgccttaagggcattgtttaag 45249370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 53199846 - 53199782
Alignment:
Q  162 tgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagtt 226  Q
    |||||| |||||| || | |||||| |||||||||||||||   |||||||||||||| ||||||    
T  53199846 tgtcttaaaaataaaaatcaaacacatgttaaagtcataactaaacaattttcaatgtaaaagtt 53199782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 41621889 - 41622005
Alignment:
Q  111 gttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaat 210  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| || | || |||||||||||||||||| | ||||||    
T  41621889 gttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaaatcaatcacttgttaaagtcataatcgtacaat 41621988  T
Q  211 tttcaatgtgaaagttg 227  Q
    ||||||||| |||||||    
T  41621989 tttcaatgtaaaagttg 41622005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 52270435 - 52270557
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||| |||||||||||||||||||| |||||||||||| |||||||  |     
T  52270435 ggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaggaaaatatgtcttgaaaatataagtcaaacacttgttacagtcatactcg 52270534  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    |||||||| |||||  |||||||    
T  52270535 tacaatttccaatgcaaaagttg 52270557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 41735397 - 41735509
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| ||||   ||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |     
T  41735397 ggtcttgttaacaagtgccctaagaatattgtttaagaaactcacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaagtcataatcg 41735496  T
Q  205 tacaattttcaat 217  Q
    |||||||| ||||    
T  41735497 tacaatttccaat 41735509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 2168424 - 2168546
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| ||||| ||||||||||  |||| | ||||| |||||||||| |||||||| |||| ||||||||||||||||| |||||     
T  2168424 ggtcttgttaacaagtgccctaaggacattgtttaaagaacccataaaaataaattatgtcctgaaaatacaagtcaaacacttgttaaagtcgtaaccg 2168523  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    ||||||||||||||  |||||||    
T  2168524 tacaattttcaatgcaaaagttg 2168546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 9093732 - 9093614
Alignment:
Q  100 tttatggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcat 199  Q
    |||| ||||||||||||||||| | ||||| ||||||||||| |||| | ||||||||||| || ||||||||||||||| ||||||||||| |||| ||    
T  9093732 tttagggtcttgttaacaagtgtcctaaggacattgtttaaggaacccataaaaagaaattttgccttgaaaatataagtcaaacacttgtttaagttat 9093633  T
Q  200 aaccttacaattttcaatg 218  Q
    |||| ||||||||||||||    
T  9093632 aaccgtacaattttcaatg 9093614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 46737403 - 46737528
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgtt-aaagtcataacc 203  Q
    ||||||| ||||||||| ||||||| ||||||||||| |||  |||||||||||| ||||||||||||||||||||||||| ||||| ||||||| || |    
T  46737403 ggtcttgctaacaagtgtcttaaggacattgtttaaggaacacacaaaaagaaatcatgtcttgaaaatataagttaaacatttgttaaaagtcacaatc 46737502  T
Q  204 ttacaattttcaatgtgaaagttgat 229  Q
     ||||||||||||||  |||||||||    
T  46737503 gtacaattttcaatgcaaaagttgat 46737528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 3121033 - 3121142
Alignment:
Q  109 ttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttaca 208  Q
    ||||||||||||| | |||| |||||||||||| |||| | |||||||||||||||||||||||||||||| || || ||||| |||| |||||| ||||    
T  3121033 ttgttaacaagtgtcctaagagcattgtttaaggaacccataaaaagaaattatgtcttgaaaatataagtcaatcatttgttgaagttataaccgtaca 3121132  T
Q  209 attttcaatg 218  Q
    ||||||||||    
T  3121133 attttcaatg 3121142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 35808659 - 35808783
Alignment:
Q  105 ggtcttgttaacaagtgccttaaggg--cattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    |||||| |||||||||||| ||||||  ||||||||||| |||| | ||||||||||||| |||||||||||||||| ||||||| ||| |||| |||||    
T  35808659 ggtcttcttaacaagtgccctaaggggacattgtttaaggaacccataaaaagaaattatatcttgaaaatataagtcaaacactagttgaagttataac 35808758  T
Q  203 cttacaattttcaatgtgaaagttg 227  Q
    | ||||||||||||||  |||||||    
T  35808759 cgtacaattttcaatgcaaaagttg 35808783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 37624798 - 37624911
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    |||||||||||||||| || ||| | ||||||||||| |||| | |||||||||| |||  |||||||||||||| |||||||||||||||| ||||||     
T  37624798 ggtcttgttaacaagttccataaagacattgtttaaggaacccataaaaagaaataatgctttgaaaatataagtcaaacacttgttaaagttataaccg 37624897  T
Q  205 tacaattttcaatg 218  Q
    ||||||||||||||    
T  37624898 tacaattttcaatg 37624911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 31861695 - 31861575
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    ||||||||||||||| | |||| | |||||||||| || | | |||||||||||||||||||||||||||||| |||||||||||||| | ||||||  |    
T  31861695 tcttgttaacaagtgtcctaagagtattgtttaaggaatccataaaaagaaattatgtcttgaaaatataagtcaaacacttgttaaaattataaccgga 31861596  T
Q  207 caattttcaatgtgaaagttg 227  Q
    |||||| |||||  |||||||    
T  31861595 caatttccaatgcaaaagttg 31861575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 43142052 - 43142135
Alignment:
Q  132 attgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatg 218  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||   |||||||||||||||||||||||||| |||||    
T  43142052 attgtttaaggaacccacaaaaagaaattatgtcttgaaaatataagtcaaa---ttgttaaagtcataaccttacaatttccaatg 43142135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 43594954 - 43595061
Alignment:
Q  109 ttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttaca 208  Q
    |||||||||| |||| |||| ||||||||||| ||||| | |||||||||||||||||||||||| |||||||||| ||| || |||| |||||| ||||    
T  43594954 ttgttaacaaatgccctaagagcattgtttaa-aaacccataaaaagaaattatgtcttgaaaatgtaagttaaacccttcttgaagttataaccgtaca 43595052  T
Q  209 attttcaat 217  Q
    |||||||||    
T  43595053 attttcaat 43595061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 29927278 - 29927391
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctt 205  Q
    |||||| ||||||||||| ||||||||||||||||| || | ||||||||||| | ||||||| ||||| |||| |||||| | | |||||||||||  |    
T  29927278 gtcttgctaacaagtgccctaagggcattgtttaaggaatccacaaaaagaaactttgtcttggaaatacaagtcaaacacatataaaagtcataactat 29927377  T
Q  206 acaattttcaatgt 219  Q
    ||||||||||||||    
T  29927378 acaattttcaatgt 29927391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 26876205 - 26876113
Alignment:
Q  125 taagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaat 217  Q
    |||||| |||||||||| |||| | |||||||||||||| |||||||||| |||| |||||||| |||||||||||||| |||||||| ||||    
T  26876205 taagggaattgtttaaggaacccaaaaaaagaaattatggcttgaaaatacaagtcaaacacttcttaaagtcataaccctacaatttccaat 26876113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 42183368 - 42183475
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| |||||||||| |||| | ||   |||||| |||||||||| ||||||||| |||| ||| |||||||||||||||||||     
T  42183368 ggtcttgttaacaagtgccctaagggcattatttatggaattcacaaaaggaaattatgttttgaaaataaaagtcaaatacttgttaaagtcataaccg 42183467  T
Q  205 tacaattt 212  Q
    || |||||    
T  42183468 tataattt 42183475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 16958503 - 16958386
Alignment:
Q  109 ttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttaca 208  Q
    ||||||||||||| || | ||||||| |||||| || | | |||||||||||||||||||||||||||||| ||||||||||| |||| |||| | | ||    
T  16958503 ttgttaacaagtgtctga-gggcattatttaaggaatccataaaaagaaattatgtcttgaaaatataagtcaaacacttgttgaagttataaacgtgca 16958405  T
Q  209 attttcaatgtgaaagttg 227  Q
    |||| |||||| |||||||    
T  16958404 atttccaatgtaaaagttg 16958386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 25231632 - 25231530
Alignment:
Q  125 taagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaag 224  Q
    ||||||||||||||||| || | | |||||||||||||||||||||||||||||| ||| | ||||| |||| |||||| |||||||| |||||  ||||    
T  25231632 taagggcattgtttaaggaatccataaaaagaaattatgtcttgaaaatataagtcaaatatttgttgaagttataaccgtacaatttccaatgcaaaag 25231533  T
Q  225 ttg 227  Q
    |||    
T  25231532 ttg 25231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 8680649 - 8680528
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||| |||||  |||||||| ||||||||| |||| | |||  |||| ||||| |||||||||||||| ||||| ||||||||||||||| |     
T  8680649 ggtcttgttaataagtgttttaagggcgttgtttaaggaacccataaag-gaaaatatgttttgaaaatataagtaaaacatttgttaaagtcataatcg 8680551  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    |||||||| |||||  |||||||    
T  8680550 tacaatttccaatgcaaaagttg 8680528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 55969995 - 55969892
Alignment:
Q  124 ttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaa 223  Q
    ||||||||||||||||||||| | ||||||| |||| ||||||| |||||| |  | |||||| ||||||||||| |||| ||||||||| ||||  |||    
T  55969995 ttaagggcattgtttaagaaatccacaaaaaaaaatcatgtcttaaaaatacatatcaaacacatgttaaagtcacaaccctacaatttttaatgcaaaa 55969896  T
Q  224 gttg 227  Q
    ||||    
T  55969895 gttg 55969892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 24504648 - 24504754
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    |||||||||||||||||||||||  |||||||||| || | | |||||  |||||| |||| |||||||| || ||| |||| ||||||| |||||| ||    
T  24504648 tcttgttaacaagtgccttaaggttattgtttaaggaatccaaaaaaaataattatatctttaaaatatatgtcaaatacttattaaagttataaccgta 24504747  T
Q  207 caatttt 213  Q
    |||||||    
T  24504748 caatttt 24504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 10098039 - 10097954
Alignment:
Q  132 attgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaat 217  Q
    |||||||||| || | ||||| ||||||| |||||||||||||||||  ||| || ||| |||||||||||  |||||||||||||    
T  10098039 attgtttaaggaatccacaaagagaaattttgtcttgaaaatataaggcaaatacatgtaaaagtcataactatacaattttcaat 10097954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 43432342 - 43432409
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||| ||||||||||| |||||||||||||||| ||| | |||| |||||| | |||||||||||||    
T  43432342 tcttgctaacaagtgccctaagggcattgtttaaaaaatctacaagaagaaactttgtcttgaaaata 43432409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 56040355 - 56040425
Alignment:
Q  156 aaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagtt 226  Q
    ||||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||||||  ||||| ||||||    
T  56040355 aaattatatcttaaaaatataagtcaaacatttgttaaagtcataacggtacaatttctaatgtaaaagtt 56040425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 29235667 - 29235594
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    ||||||||| | |||| ||||| | |||| |||| ||||||||||||| ||||||||||||| |||| ||||||    
T  29235667 taacaagtgtcctaagagcattatctaaggaacccacaaaaagaaattttgtcttgaaaatagaagtcaaacac 29235594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 4512803 - 4512871
Alignment:
Q  134 tgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||||||| | ||||||||||||| |||||| |||| |||||| |||||| ||| ||||| |||||    
T  4512803 tgtttaagaaatccacaaaaagaaattttgtcttaaaaacataagtcaaacacatgtaaaagttataac 4512871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 43771854 - 43771908
Alignment:
Q  148 acaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||||||| | |||||| |||||| |||| |||||| |||||||||||||||    
T  43771854 acaaaaagaaactttgtcttaaaaatacaagtcaaacacatgttaaagtcataac 43771908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 49013784 - 49013853
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaa 183  Q
    |||||||||||| || | ||||||||||| | || | ||||| ||||| ||||||||||||||||||||||    
T  49013784 taacaagtgcctaaatg-cattgtttaaggatcctataaaaataaattttgtcttgaaaatataagttaaa 49013853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 4066373 - 4066446
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    |||||| || ||||||| |||||||||||||| | |  | |||||||||| ||||||||| |||||| ||||||    
T  4066373 taacaaatgtcttaaggacattgtttaagaaatccattataagaaattatatcttgaaaacataagtcaaacac 4066446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 6917298 - 6917351
Alignment:
Q  121 gccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||||||||||||||||||| || | | ||||||||||  |||||||||||||    
T  6917298 gccttaagggcattgtttaaggaatccataaaaagaaatactgtcttgaaaata 6917351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 3641920 - 3641952
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtt 137  Q
    ||||||||||||||||||||||| |||||||||    
T  3641920 ggtcttgttaacaagtgccttaaaggcattgtt 3641952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 36903935 - 36904055
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    ||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||    
T  36903935 tcttgctaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttattaaagtcataaccgta 36904034  T
Q  207 caattttcaatgtgaaagttg 227  Q
    |||||| |||||  |||||||    
T  36904035 caatttccaatgcaaaagttg 36904055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 19955050 - 19955145
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||| || | |||||||||||||||||||||    
T  19955050 gtcttgttaacaagtgccttaagagcattgtttaaggaacccacaaaaagaaattatgttttgaaaatacaaatcaaacacttgttaaagtcataa 19955145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 38402502 - 38402620
Alignment:
Q  99 atttatggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtca 198  Q
    ||||| ||||||| ||||||||| | ||||||||||||||||| || | | ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  38402502 atttagggtcttgctaacaagtgtcataagggcattgtttaaggaatccataaaaagaaattatgttttgaaaatacaagttaaacacttcttaaagtca 38402601  T
Q  199 taaccttacaattttcaat 217  Q
    ||||| |||||||| ||||    
T  38402602 taaccgtacaatttccaat 38402620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 9047703 - 9047624
Alignment:
Q  148 acaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9047703 acaaaaagaaattatgttttgaaaatacaagtcaaacacttgttaaagtcataaccgtacaattttcaatgtaaaagttg 9047624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 224037 - 223924
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| |||  |||||||||||| |||  | |||||||||||||  ||||||||||||||| |||||||| || |||| ||||||     
T  224037 ggtcttgttaacaagtgccctaaatgcattgtttaaggaactcataaaaagaaattataccttgaaaatataagtcaaacacttattgaagttataaccg 223938  T
Q  205 tacaattttcaatg 218  Q
    ||||||||||||||    
T  223937 tacaattttcaatg 223924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 39791503 - 39791610
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||| | |||||| |||||||||  || | ||||||||||||||||| ||||||||| |||| ||||| ||||||||||||| | |     
T  39791503 ggtcttgttaacaagtgtcctaagggtattgtttaaagaatccacaaaaagaaattatgttttgaaaatacaagtcaaacatttgttaaagtcattatcg 39791602  T
Q  205 tacaattt 212  Q
    ||||||||    
T  39791603 tacaattt 39791610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 4428778 - 4428872
Alignment:
Q  133 ttgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    ||||||||| || | | ||||||||||||||||||||| |||||||| ||| | || |||||||||||||| || |||||||||||| |||||||    
T  4428778 ttgtttaaggaatccataaaaagaaattatgtcttgaagatataagtcaaatatttattaaagtcataaccgtataattttcaatgtaaaagttg 4428872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 13490814 - 13490924
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    ||||| ||||||||||| |||  |||||||||||  |||| ||||||| ||||| |||||||||||||||||  |||||| ||| ||| |||||||  ||    
T  13490814 tcttgctaacaagtgccctaaaagcattgtttaaagaacccacaaaaataaattttgtcttgaaaatataaggcaaacacatgtaaaaatcataactata 13490913  T
Q  207 caattttcaat 217  Q
    |||||||||||    
T  13490914 caattttcaat 13490924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 2854506 - 2854409
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||| ||||||||||| ||||||||| ||||||| || | ||| ||||||||| ||||||||||||| ||||||||||  | | |||||||||||    
T  2854506 ggtcttgctaacaagtgccctaagggcatcgtttaaggaatccacataaagaaattttgtcttgaaaatacaagttaaacatatctaaaagtcataac 2854409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 15335813 - 15335901
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    |||||||||||  |||||||||||||||| |||| ||||| |||| || ||||||||||||| |||| |||||  ||||||||||||||    
T  15335813 taacaagtgccccaagggcattgtttaaggaacccacaaagagaatttttgtcttgaaaatacaagtcaaacatatgttaaagtcataa 15335901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 13530692 - 13530610
Alignment:
Q  103 atggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaaca 185  Q
    ||||||||||||||||||| ||||||| ||||||| ||| || | ||||||| ||| | ||||||||||||| |||| |||||    
T  13530692 atggtcttgttaacaagtgtcttaaggacattgttaaaggaatccacaaaaaaaaagtttgtcttgaaaatacaagtcaaaca 13530610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 3002489 - 3002420
Alignment:
Q  127 agggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagt 196  Q
    ||||||||||||||  |||| ||||||||||||||| |||| |||||| |||| ||||| ||||||||||    
T  3002489 agggcattgtttaaagaacccacaaaaagaaattatatcttaaaaatacaagtcaaacatttgttaaagt 3002420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 1575126 - 1575035
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtca 198  Q
    ||||| |||||| |||| ||| | ||||||||||||||   ||||  ||||||| ||||||||||||| ||||||||||| ||| |||||||    
T  1575126 tcttggtaacaaatgccctaaagacattgtttaagaaatgtacaaggagaaattttgtcttgaaaatacaagttaaacacatgtaaaagtca 1575035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 9431444 - 9431542
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaa-ttatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||||||||||||||  ||| | | |||||||||||| | ||||||| ||| ||| ||||| | ||||  ||| ||||||||||||||||||||||    
T  9431444 ggtcttgttaacaagtgcactaaagacgttgtttaagaaatccacaaaaaaaaaattacgtcttaataatacgagtcaaacacttgttaaagtcataac 9431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 14812394 - 14812300
Alignment:
Q  132 attgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagtt 226  Q
    |||||||||| || ||||||||||||||| | ||||||||||| |||| |||||  ||| ||||| ||||    |||||||||||||| ||||||    
T  14812394 attgtttaaggaaacaacaaaaagaaattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagtt 14812300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 41283336 - 41283420
Alignment:
Q  132 attgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaat 217  Q
    |||||||||| |||  | |||||||||||||  ||||||||||||||| ||| | ||||| |||| |||||| |||||||||||||    
T  41283336 attgtttaaggaactcataaaaagaaattataccttgaaaatataagtcaaatatttgtt-aagttataaccgtacaattttcaat 41283420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 14306236 - 14306173
Alignment:
Q  111 gttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||||||||||  |||| | ||||||||||||| | || |||||||||| |||||||||||||    
T  14306236 gttaacaagtgctctaagaggattgtttaagaaatccacgaaaagaaattttgtcttgaaaata 14306173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 6563052 - 6563162
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    |||||||||||| || |||||||  |||||||||| |||| | ||||| ||||||| | || ||||||||| | |||||||| || || | ||||||  |    
T  6563052 tcttgttaacaaatgtcttaaggatattgtttaaggaacccataaaaaaaaattatattttaaaaatataaatcaaacacttattgaaattataaccgca 6563151  T
Q  207 caattttcaat 217  Q
    |||||| ||||    
T  6563152 caatttacaat 6563162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 248086 - 248127
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaacc 146  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||    
T  248086 ggtcttgctaacaagtgtcttaagggcattgtttaagcaacc 248127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 16471264 - 16471195
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaa 182  Q
    ||||||||| | ||||  ||||||||||| |||| ||||||||||||| | | ||||||||| |||||||    
T  16471264 taacaagtgtcataagaacattgtttaaggaacccacaaaaagaaattttatgttgaaaatacaagttaa 16471195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 31608158 - 31608202
Alignment:
Q  129 ggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaat 173  Q
    |||||||||||||||||| | || |||||||| ||||||||||||    
T  31608158 ggcattgtttaagaaacctataataagaaattttgtcttgaaaat 31608202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 24999535 - 24999437
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacc 203  Q
    ||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24999535 ggtcttgttaacaagtgccctaagggcattgttaaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaagtcataacc 24999437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 38573263 - 38573375
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctt 205  Q
    |||||||||||||||||  ||||  ||||||||||| |||| | |||||||||||||| ||||||||||||||| ||||| ||||| |||| |||||| |    
T  38573263 gtcttgttaacaagtgctctaagaacattgtttaaggaacccataaaaagaaattatgccttgaaaatataagtcaaacatttgttgaagttataaccgt 38573362  T
Q  206 acaattttcaatg 218  Q
    ||||||| |||||    
T  38573363 acaatttccaatg 38573375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 13018459 - 13018581
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||| | ||||||||||||||||| |||| | ||||  ||| ||| |||||||||||||||| ||||| ||||||||||||||  |     
T  13018459 ggtcttgttaacaagtgtcctaagggcattgtttaaggaacccataaaagaaaaatatatcttgaaaatataagtcaaacatttgttaaagtcatattcg 13018558  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    |||||||| |||||  |||||||    
T  13018559 tacaatttccaatgcaaaagttg 13018581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 23518170 - 23518283
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||| ||||||||||||  ||| ||||||||||||| |||| ||||||||||||||| |||| ||||||||| | ||| | || ||||||||  ||||     
T  23518170 ggtctcgttaacaagtgctctaaaggcattgtttaaggaacccacaaaaagaaattatatcttaaaaatataaatcaaatatttattaaagtctgaaccg 23518269  T
Q  205 tacaattttcaatg 218  Q
    ||||||||||||||    
T  23518270 tacaattttcaatg 23518283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 36642846 - 36642724
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||| |||||   |||| ||||||||||||  | | |||||| |||||||||||||||||||| |||| ||||| ||| ||||||||||| |     
T  36642846 ggtcttgttaataagtgttctaagagcattgtttaaggtatctacaaaaggaaattatgtcttgaaaatacaagtcaaacatttgataaagtcataatcg 36642747  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    ||||| || |||||| |||||||    
T  36642746 tacaaattccaatgtaaaagttg 36642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 7642615 - 7642692
Alignment:
Q  150 aaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||| |||||| |||||||| |||||  |||||||    
T  7642615 aaaaagaaattatgttttgaaaatataagtcaaacacttgttgaagttataaccgtacaatttacaatgcaaaagttg 7642692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 13177901 - 13177804
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||| ||||||||| | ||||||||||||||||| || |  |||||||||| | ||||||||||||| |||| |||||| ||| |||||||||||    
T  13177901 ggtcttgctaacaagtgtcctaagggcattgtttaaggaatcttcaaaaagaaagtttgtcttgaaaatacaagtcaaacacatgtaaaagtcataac 13177804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 11611646 - 11611527
Alignment:
Q  100 tttatggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttg-aaaatataagttaaacacttgttaaagtca 198  Q
    |||| ||||||||||||||||| | ||||| ||||||||||| |||| | ||||||| ||||||  ||| |||| |||||||||||||||||| |||| |    
T  11611646 tttaaggtcttgttaacaagtgtcctaaggacattgtttaaggaacccataaaaagatattatgctttgaaaaaaataagttaaacacttgttgaagtta 11611547  T
Q  199 taaccttacaattttcaatg 218  Q
    | ||| || |||| ||||||    
T  11611546 ttaccgtataattctcaatg 11611527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 12978247 - 12978323
Alignment:
Q  136 tttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattt 212  Q
    ||||||||||  | ||||||||||||||||||||||||| || | ||||||||||||||||||  ||| ||||||||    
T  12978247 tttaagaaactcataaaaagaaattatgtcttgaaaatacaaatcaaacacttgttaaagtcacgaccgtacaattt 12978323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 1090015 - 1090077
Alignment:
Q  124 ttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    |||||||||||||||||| |||| |||||||| |||| ||||||||||||| |||| ||||||    
T  1090015 ttaagggcattgtttaaggaacccacaaaaaggaattttgtcttgaaaatacaagtcaaacac 1090077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 12763411 - 12763309
Alignment:
Q  100 tttatggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcat 199  Q
    |||| |||||||||||||| || | ||| ||||||||||||| |||| | ||||||||| ||||  |||||||||||||| ||| | ||||| |||| ||    
T  12763411 tttaaggtcttgttaacaaatgtcctaaaggcattgtttaaggaacccataaaaagaaagtatgctttgaaaatataagtcaaatatttgttgaagttat 12763312  T
Q  200 aac 202  Q
    |||    
T  12763311 aac 12763309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 44395633 - 44395689
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattat 162  Q
    |||||||||||||||| | ||||||||||||||||| |||| | |||||||||||||    
T  44395633 gtcttgttaacaagtgtcataagggcattgtttaaggaacccataaaaagaaattat 44395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 45079422 - 45079361
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||||||||   |||| ||||||||||| |||| ||||||||| |||||||||||||||||    
T  45079422 taacaagtgcgccaaggtcattgtttaaggaacccacaaaaagacattatgtcttgaaaata 45079361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 141
Target Start/End: Original strand, 33015567 - 33015598
Alignment:
Q  110 tgttaacaagtgccttaagggcattgtttaag 141  Q
    ||||||||||||||||||||||||||||||||    
T  33015567 tgttaacaagtgccttaagggcattgtttaag 33015598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 10328648 - 10328733
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtca 198  Q
    ||||||||| | ||||||  |||||||||||| | | ||||||||||| ||||||  |||||||||| |||||  | |||||||||    
T  10328648 taacaagtgtcgtaagggtgttgtttaagaaatctataaaaagaaattttgtcttacaaatataagtcaaacatatcttaaagtca 10328733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 12978383 - 12978350
Alignment:
Q  110 tgttaacaagtgccttaagggcattgtttaagaa 143  Q
    |||||||||||||| |||||||||||||||||||    
T  12978383 tgttaacaagtgccctaagggcattgtttaagaa 12978350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 42446555 - 42446640
Alignment:
Q  132 attgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaat 217  Q
    |||||||||  |||| ||||||||||||| ||| || ||||||||||||||| |  ||| ||||| |||||   ||||||||||||    
T  42446555 attgtttaaagaacctacaaaaagaaattttgttttaaaaatataagttaaatatatgtaaaagttataactacacaattttcaat 42446640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 37125599 - 37125567
Alignment:
Q  160 tatgtcttgaaaatataagttaaacacttgtta 192  Q
    |||||||| ||||||||||||||||||||||||    
T  37125599 tatgtcttaaaaatataagttaaacacttgtta 37125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 28514609 - 28514731
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||     
T  28514609 ggtcttgttaacaagtgccctaagggcattgtttaaggaacccataaaaagaaattatgccttgaaaatataagtcaaacacttgttcaagttataaccg 28514708  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    |||||||| |||||  |||||||    
T  28514709 tacaatttccaatgcaaaagttg 28514731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 31191345 - 31191465
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctt 205  Q
    |||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |    
T  31191345 gtcttgttaacaagtgccctaagggcattgtttaaggaaccat-aaaaagaaattatgccttgaaaatataagtcaaacacttgttaaagttataaccgt 31191443  T
Q  206 acaattttcaatgtgaaagttg 227  Q
     |||||| |||||| |||||||    
T  31191444 gcaatttccaatgtaaaagttg 31191465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 10624917 - 10625030
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    |||||||||||||||||   ||||||||||||||||  |||| ||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||     
T  10624917 ggtcttgttaacaagtgttctaagggcattgtttaaagaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttattatagtcataaccg 10625016  T
Q  205 tacaattttcaatg 218  Q
    ||||||||||||||    
T  10625017 tacaattttcaatg 10625030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 28646761 - 28646639
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    |||||||||||||| |  |||||||  |||||||||  || | |||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||     
T  28646761 ggtcttgttaacaattatcttaaggatattgtttaaagaatctacaaaaagaaattatgtcttaaaaatataagtcaaaaatttgttaaagtcataaccg 28646662  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    |||||||| |||||| |||||||    
T  28646661 tacaatttccaatgtaaaagttg 28646639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 45618593 - 45618471
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    |||||| |||||||||||| |||||| |||||||||| |||| | |||| ||||||||||||||||||||||||| ||| | || ||||||||| |||      
T  45618593 ggtcttattaacaagtgccctaagggtattgtttaaggaacccataaaaggaaattatgtcttgaaaatataagtcaaatatttattaaagtcacaacgg 45618494  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    ||||||||||||||  |||||||    
T  45618493 tacaattttcaatgcaaaagttg 45618471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 48488563 - 48488443
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctta 206  Q
    ||||||||| ||||||  |||| |||||||||||| |||| | ||||||||||||||  |||||||||||||| ||||||||||| |||| |||||| ||    
T  48488563 tcttgttaataagtgctctaagtgcattgtttaaggaacccataaaaagaaattatgctttgaaaatataagtcaaacacttgttgaagttataaccgta 48488464  T
Q  207 caattttcaatgtgaaagttg 227  Q
    |||||| |||||  |||||||    
T  48488463 caatttccaatgcaaaagttg 48488443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 37869822 - 37869743
Alignment:
Q  148 acaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  37869822 acaaaaagaaattatgttttaaaaatataagtcaaacacttgttaaagtcataaccgtacaattttcaatgcaaaagttg 37869743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 1111807 - 1111731
Alignment:
Q  143 aaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgt 219  Q
    |||| |||||||  |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  1111807 aacccacaaaaaataattatgttttgaaaatataagtcaaacacttgttaaagtcataaccatacaattttcaatgt 1111731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 23247873 - 23247752
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    |||||||| |||||||| || ||||||||||||| || || | | |||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||     
T  23247873 ggtcttgtaaacaagtgtct-aagggcattgttttagtaatccataaaaagaaattatgccttgaaaatataagtcaaacacttgttgaagttataaccg 23247775  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    | |||||| |||||  |||||||    
T  23247774 ttcaatttccaatgcaaaagttg 23247752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 5081907 - 5081786
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacctt 205  Q
    |||||||||| ||||| | |||  ||||||||||||| | | |||||| |||||||| ||||  ||||| |||| ||||||||| ||||||||||||| |    
T  5081907 gtcttgttaaaaagtgtcctaaatgcattgtttaagatatctacaaaaggaaattatatcttagaaatacaagtcaaacacttgataaagtcataaccct 5081808  T
Q  206 acaattttcaatgtgaaagttg 227  Q
    |||| ||||||||| |||||||    
T  5081807 acaaatttcaatgtaaaagttg 5081786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 25120090 - 25119981
Alignment:
Q  103 atggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||||| ||||||||||| |||||| |||||||||| || | ||||||||||||| ||||||||||||| || | ||| |  ||||||||| |||||    
T  25120090 atggtcttgctaacaagtgccctaagggtattgtttaaggaatccacaaaaagaaattgtgtcttgaaaatacaattcaaatatatgttaaagttataac 25119991  T
Q  203 cttacaattt 212  Q
    | ||||||||    
T  25119990 catacaattt 25119981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 40199107 - 40198999
Alignment:
Q  103 atggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    |||||||||||||||| |||  ||||| | ||||||||  || | | |||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  40199107 atggtcttgttaacaaatgctctaaggacgttgtttaaagaatccataaaaagaaattatgccttgaaaatataagttagacacttgttagagttataac 40199008  T
Q  203 cttacaatt 211  Q
    | |||||||    
T  40199007 catacaatt 40198999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 19086276 - 19086383
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||| |||||||| |||  | |||| ||||||||| ||| | | |||||||||||||| ||||||||||||||| ||||||||||| |||| || |||     
T  19086276 ggtctcgttaacaaatgctctcagggtattgtttaaaaaatccataaaaagaaattatgccttgaaaatataagtcaaacacttgttgaagttattaccg 19086375  T
Q  205 tacaattt 212  Q
    ||||||||    
T  19086376 tacaattt 19086383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 45662379 - 45662269
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaa-gaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacc 203  Q
    ||||||||||||||||| |||||| | ||||||||| ||| || | ||||||||||||||| |||||||||||||| | |||  ||||||||||||||||    
T  45662379 ggtcttgttaacaagtgtcttaagagtattgtttaaggaatcccataaaaagaaattatgt-ttgaaaatataagtcataca--tgttaaagtcataacc 45662283  T
Q  204 ttacaattttcaat 217  Q
     | |||||| ||||    
T  45662282 gtgcaatttccaat 45662269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 8584196 - 8584122
Alignment:
Q  129 ggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacc 203  Q
    |||| |||||||| || | | ||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  8584196 ggcactgtttaaggaatccataaaaataaattatatcttgaaaatataagttaaacacttgttgaagttataacc 8584122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 34823634 - 34823562
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaaca 185  Q
    |||||||||||  ||||| |||| ||||| |||| | ||||  ||||||||||||||||||||||||||||||    
T  34823634 taacaagtgccaaaaggggattgcttaaggaacccataaaagaaaattatgtcttgaaaatataagttaaaca 34823562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 29648674 - 29648573
Alignment:
Q  117 aagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaa 216  Q
    ||||| ||||| |||||||  ||| ||| | |||||||||| || |||||| |||||||||||||||||| ||| ||| |||||||   | |||||||||    
T  29648674 aagtgtcttaaaggcattgaataaaaaatcgacaaaaagaatttttgtcttaaaaatataagttaaacacatgtaaaaatcataactacataattttcaa 29648575  T
Q  217 tg 218  Q
    ||    
T  29648574 tg 29648573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 43803312 - 43803370
Alignment:
Q  143 aaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    |||| ||||||||||||||| ||||||||||  ||| ||||||||| ||||||| ||||    
T  43803312 aacctacaaaaagaaattatatcttgaaaatgcaaggtaaacacttattaaagttataa 43803370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 3181300 - 3181215
Alignment:
Q  134 tgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgt 219  Q
    ||||||||||||| ||||||||| | | ||||||||||||| |||| ||| | |||| ||| | |||||   ||||||||||||||    
T  3181300 tgtttaagaaacctacaaaaagatactttgtcttgaaaatacaagtcaaatatttgtaaaaatgataactgcacaattttcaatgt 3181215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 19677139 - 19677066
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataag 178  Q
    ||||||| |||| | |||| | ||||||||| ||||| || | ||||| ||||||| |||||||||||||||||    
T  19677139 ggtcttgctaaccaatgccctcagggcattggttaaggaatcgacaaatagaaattttgtcttgaaaatataag 19677066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 29414631 - 29414719
Alignment:
Q  131 cattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgt 219  Q
    ||||||||||| || | |||||| | || | ||||||||||||| |||| ||| || ||| ||||||||| |  |||||||||||||||    
T  29414631 cattgtttaaggaagccacaaaatggaactttgtcttgaaaatacaagtcaaatacatgtaaaagtcatacctatacaattttcaatgt 29414719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 48339194 - 48339146
Alignment:
Q  131 cattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagt 179  Q
    ||||||||||  |||| |||||||||||||  |||||||||||||||||    
T  48339194 cattgtttaaagaacccacaaaaagaaatttcgtcttgaaaatataagt 48339146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 6100810 - 6100688
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||| | || |||||||| ||||||||||||||     
T  6100810 ggtcttgttaacaagtgccctaagggcattgtttaaggaacccacaaaaggaaattatgtcttgaaaatacatgtcaaacacttcttaaagtcataaccc 6100711  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    || |||||||||||  |||||||    
T  6100710 tataattttcaatgcaaaagttg 6100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 40002 - 40128
Alignment:
Q  90 actgtatttattta-tggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacactt 188  Q
    |||| ||||||||| |||||||| ||||||||||| ||||| ||||||||||| |||| ||| ||||||||| ||||||||||||| || | |||||| |    
T  40002 actgaatttatttaatggtcttgctaacaagtgccctaaggacattgtttaaggaacccacataaagaaattttgtcttgaaaatacaaatcaaacacat 40101  T
Q  189 gttaaagtcataaccttacaattttca 215  Q
    || |||||||||||  | |||||||||    
T  40102 gtaaaagtcataactatgcaattttca 40128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 33134342 - 33134227
Alignment:
Q  98 tatttatggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataa-gttaaacacttgttaaagt 196  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||| |||| | ||||| |||||||| ||  ||||||||| || ||||| ||||| ||||    
T  33134342 tatttagggtcttgttaacaagtgtcttaaaggcattgtttaaggaacccataaaaaaaaattatgcctcaaaaatataaggtcaaacatttgttgaagt 33134243  T
Q  197 cataaccttacaattt 212  Q
     |||||  ||||||||    
T  33134242 tataactgtacaattt 33134227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 32148015 - 32147902
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||| | | | ||| ||||||||  || | ||||||||||||||||| ||||||||| || | ||| | || ||||||||||||||     
T  32148015 ggtcttgttaacaagtgtcctgatggctttgtttaaagaatccacaaaaagaaattatgttttgaaaatacaaatcaaatatttattaaagtcataaccg 32147916  T
Q  205 tacaattttcaatg 218  Q
    |||||||| |||||    
T  32147915 tacaatttgcaatg 32147902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 7984566 - 7984654
Alignment:
Q  131 cattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgt 219  Q
    ||||||||||  |||| ||||||||||| | ||||||||||||| |||| |||||| ||| |||||||||||   | ||||||||||||    
T  7984566 cattgtttaatgaacccacaaaaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtcataactacaaaattttcaatgt 7984654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 31631951 - 31631891
Alignment:
Q  125 taagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaaca 185  Q
    |||| |||||||||||| |||  ||||||||||| | |||||||||||||||||| |||||    
T  31631951 taagagcattgtttaaggaacttacaaaaagaaagtttgtcttgaaaatataagtcaaaca 31631891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 894750 - 894861
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||| ||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| || |||| ||||||||||||||||||||| |     
T  894750 ggtcttgctaacaagtgccctaagggcattgtttaaggaacccacaaaaggaaattatgtcttgaaagtacaagtcaaacacttgttaaagtcataatcg 894849  T
Q  205 tacaattttcaa 216  Q
    ||||||||||||    
T  894850 tacaattttcaa 894861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 42410342 - 42410220
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||  |||     
T  42410342 ggtctcgttaacaagtgccctaagggcattgtttaaggaacccacaaaaagaaattatgtcttgaaaatacaagtcaaacacttgttaaggtcaatacca 42410243  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    || ||||| |||||  |||||||    
T  42410242 tataatttccaatgcaaaagttg 42410220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 36563830 - 36563944
Alignment:
Q  111 gttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaat 210  Q
    ||||||||||| | ||||| ||||||||||| |||   ||||||||||||||| ||||||||||||||| |||||||||||||||| ||| || ||||||    
T  36563830 gttaacaagtgtcctaaggacattgtttaaggaact--caaaaagaaattatgccttgaaaatataagtcaaacacttgttaaagttatatccgtacaat 36563927  T
Q  211 tttcaatgtgaaagttg 227  Q
    ||||||||| |||||||    
T  36563928 tttcaatgtaaaagttg 36563944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 38067837 - 38067746
Alignment:
Q  126 aagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaat 217  Q
    ||||||| ||||||||||| | |||||||||||||||| |||||||||| |||| ||||| ||||||||||||| | | |||||||||||||    
T  38067837 aagggcactgtttaagaaatccacaaaaagaaattatgccttgaaaatacaagtcaaacatttgttaaagtcatcatcgtacaattttcaat 38067746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 3831519 - 3831415
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattt 212  Q
    ||||||||| ||||||||||||||||||  |||| | ||||| ||||||||||||||||||| || || ||||| |||||||||||||||  ||||||||    
T  3831519 taacaagtgtcttaagggcattgtttaaagaacccataaaaa-aaattatgtcttgaaaatacaaattcaacacatgttaaagtcataactgtacaattt 3831421  T
Q  213 tcaatg 218  Q
     |||||    
T  3831420 ccaatg 3831415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 1795922 - 1795847
Alignment:
Q  152 aaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    |||||||||| |||||||||||| |||| |||||| | |||||||||||||| |||||||||||| || |||||||    
T  1795922 aaagaaattaagtcttgaaaatacaagtcaaacacatcttaaagtcataaccgtacaattttcaaggtaaaagttg 1795847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 32213482 - 32213563
Alignment:
Q  106 gtcttgttaacaagtgccttaa---gggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaac 184  Q
    |||||| | |||||||||||||   ||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||    
T  32213482 gtcttgctgacaagtgccttaattagggcattgtttaagaaacccataaaaagaaattatgtcttaaaaatataagtcaaac 32213563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 51049842 - 51049887
Alignment:
Q  156 aaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  51049842 aaattatgtcttgaaaatacaagttaaacacttgttaaagtcataa 51049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 5892788 - 5892700
Alignment:
Q  129 ggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaat 217  Q
    ||||||||||||| ||   ||||||||||||||| |||| |||||| |||| |||||||| |||||||||||||| || ||||| ||||    
T  5892788 ggcattgtttaaggaatatacaaaaagaaattatatcttaaaaatacaagtcaaacacttattaaagtcataaccgtataatttccaat 5892700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 11818130 - 11818244
Alignment:
Q  103 atggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||||  |||||||| |  ||| ||||||||||||  |||| | ||||||||||  ||||||||||||| |||| ||| || ||| |||||||||||    
T  11818130 atggtcttactaacaagtactctaaaggcattgtttaaagaacccataaaaagaaatcttgtcttgaaaatacaagtcaaaaacatgtaaaagtcataac 11818229  T
Q  203 cttacaattttcaat 217  Q
      |||||||||||||    
T  11818230 tatacaattttcaat 11818244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 21780059 - 21779973
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcat 199  Q
    |||||||| || ||| |||||||||||||||| | |||| |||||| | ||||||||||||| |||| |||||| ||| ||||||||    
T  21780059 taacaagttccctaatggcattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtcat 21779973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 894651 - 894691
Alignment:
Q  157 aattatgtcttgaaaatataagttaaacacttgttaaagtc 197  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  894651 aattatgtcttaaaaatataagttaaacacttgttaaagtc 894691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 34038941 - 34038861
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaaca 185  Q
    ||||||| ||||||||| | |||||| |||||||||||||   | ||||||||||||||  |||||||||||||| |||||    
T  34038941 ggtcttgataacaagtgacataagggtattgtttaagaaattcataaaaagaaattatgcattgaaaatataagtcaaaca 34038861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 50362353 - 50362309
Alignment:
Q  11 cagagaagcaggatatcaaaactatagtttgtaatgcttagtaag 55  Q
    |||| |||||||||||||||||| |||||||||||||||||||||    
T  50362353 cagaaaagcaggatatcaaaactgtagtttgtaatgcttagtaag 50362309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 35365666 - 35365592
Alignment:
Q  111 gttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaaca 185  Q
    ||||||||||||| ||||   ||||||||||||| | | || |||||||||| |||||||||||||||| |||||    
T  35365666 gttaacaagtgccctaagaaaattgtttaagaaatccataataagaaattatatcttgaaaatataagtcaaaca 35365592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 13029140 - 13029061
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    |||||||||||||||| | ||||| |||| |||||||||   ||||||||||||| |||||| ||||||||| | ||||||    
T  13029140 gtcttgttaacaagtgtcataaggtcattctttaagaaatttacaaaaagaaattgtgtctt-aaaatataaatcaaacac 13029061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 23459474 - 23459528
Alignment:
Q  164 tcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatg 218  Q
    ||||||||||| |||| |||||| ||||||||| |||||  ||||||||||||||    
T  23459474 tcttgaaaatacaagtaaaacacatgttaaagttataacggtacaattttcaatg 23459528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 13984345 - 13984268
Alignment:
Q  150 aaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    ||||||||||||||  || ||||||||||| ||||| || || |||| |||||| ||| |||| |||||| |||||||    
T  13984345 aaaaagaaattatgctttaaaaatataagtcaaacatttattgaagttataaccgtacgatttccaatgtaaaagttg 13984268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 26829636 - 26829563
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataag 178  Q
    ||||||| ||||||||||| |||||||| || ||||||||   ||||  ||||||| ||||||| |||||||||    
T  26829636 ggtcttgctaacaagtgccctaagggcaatggttaagaaatttacaattagaaattttgtcttggaaatataag 26829563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 38788691 - 38788768
Alignment:
Q  150 aaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgtgaaagttg 227  Q
    |||| |||||| ||||||| ||||  |||| |||||||||| |||||||||||   ||||||||| |||| |||||||    
T  38788691 aaaaggaaattttgtcttgtaaattcaagtcaaacacttgtgaaagtcataactaaacaattttccatgtaaaagttg 38788768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 34338876 - 34338974
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacc 203  Q
    ||||||||||||||||||| ||||| ||||||||||  |||| | |||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||    
T  34338876 ggtcttgttaacaagtgccctaaggacattgtttaaagaacccataaaaagaaattatgccttgaaaatataagtcaaacacttgttgaagttataacc 34338974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 15476858 - 15476970
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||||||||||||  | ||||| ||||||||||| |||  | |||| | || |||||||||||||||||||| ||||||||||||||||||||  |     
T  15476858 ggtcttgttaacaagtatcctaaggacattgtttaaggaacgcataaaagggaaatatgtcttgaaaatataagtcaaacacttgttaaagtcatactcg 15476957  T
Q  205 tacaattttcaat 217  Q
    |||||||||||||    
T  15476958 tacaattttcaat 15476970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 25713323 - 25713445
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||| |||||||||| ||||| |||||||||||| |||  ||||||||||||||| ||||||||||||||   ||| || |||||||||||||| |     
T  25713323 ggtcttgctaacaagtgctttaagtgcattgtttaaggaactcacaaaaagaaattatctcttgaaaatataaagcaaatacatgttaaagtcataatcg 25713422  T
Q  205 tacaattttcaatgtgaaagttg 227  Q
    ||||| || |||||  |||||||    
T  25713423 tacaagttccaatgcaaaagttg 25713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 32292364 - 32292254
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacct 204  Q
    ||||||| ||||||||| | |||||| |||||||||| |||| | ||||| |||||| || |||||||||||||| ||||| |||||||||| |||| |     
T  32292364 ggtcttgctaacaagtgtcctaagggtattgtttaaggaacctataaaaataaattacgttttgaaaatataagtcaaacatttgttaaagttataaacc 32292265  T
Q  205 tacaattttca 215  Q
    |||||||||||    
T  32292264 tacaattttca 32292254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 26362394 - 26362299
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcata 200  Q
    ||||||||||||||||||| |||||  |||||||||| |||| ||||||  |||  |||| |||||||||||| |||||||||||||||| |||||    
T  26362394 ggtcttgttaacaagtgccctaaggatattgtttaaggaacccacaaaagaaaaacatgtattgaaaatataaattaaacacttgttaaaatcata 26362299  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 20894313 - 20894227
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcat 199  Q
    ||||||||||| |||||||||||||||||||| | |||| |||||| | ||||||||||||| |||| |||||| ||| ||||||||    
T  20894313 taacaagtgccctaagggcattgtttaagaaatctacaagaagaaactttgtcttgaaaatacaagtcaaacacatgtaaaagtcat 20894227  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 10285401 - 10285333
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||| |||||||||    
T  10285401 ggtcttgttaacaagtgccctaagggcattgtttaaggaacc-ataaaaagaaattatgttttgaaaata 10285333  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 36487184 - 36487281
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    ||||||| ||||||||||  ||||  ||||||||||| |||| ||||||||||||||||| ||||||||| || | |||||  |||||||||||||||    
T  36487184 ggtcttgctaacaagtgctataagaacattgtttaaggaacccacaaaaagaaattatgtattgaaaatacaaatcaaacatatgttaaagtcataac 36487281  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 37447380 - 37447299
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    ||||||| ||||||||||| ||||  ||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||    
T  37447380 ggtcttgctaacaagtgccctaagaacattgtttaaggaacctacaaaaagaaactttgtcttgaaaatataagtcaaacac 37447299  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 1088337 - 1088250
Alignment:
Q  125 taagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattt 212  Q
    |||| |||||||||||| |||| ||||||||||||||| |||| |||||||||||||||||  | ||||| |||||| | ||||||||    
T  1088337 taagtgcattgtttaaggaacccacaaaaagaaattatatcttaaaaatataagttaaacatatattaaaatcataatcgtacaattt 1088250  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 565646 - 565566
Alignment:
Q  106 gtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    ||||| ||||||| || |||||||||||| ||||| ||||| |||||||||| || ||||||||||||| |||| ||||||    
T  565646 gtcttattaacaaatgtcttaagggcattatttaaaaaacctacaaaaagaatttttgtcttgaaaatacaagtcaaacac 565566  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 16054509 - 16054421
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    ||||||||| | ||||| |||||||||||||||| ||||||||||||| ||| || |||||| |||| |||||| | | ||||||||||    
T  16054509 taacaagtgtcctaaggacattgtttaagaaacccacaaaaagaaattttgtttttaaaatacaagtcaaacacatataaaagtcataa 16054421  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 29045447 - 29045381
Alignment:
Q  136 tttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataac 202  Q
    |||||| |||| ||||||||||||||| | || ||||||||| | ||||||||||||||||||||||    
T  29045447 tttaaggaacccacaaaaagaaattatatattaaaaatataaatcaaacacttgttaaagtcataac 29045381  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 22088574 - 22088522
Alignment:
Q  105 ggtcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaa 157  Q
    ||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||    
T  22088574 ggtcttgctaacaagtgccctaagggcattgtttaaggaacccacaaaaagaa 22088522  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 40220354 - 40220430
Alignment:
Q  125 taagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataa 201  Q
    ||||||||||||||||| ||||   |||| |||||| ||||||||||||| |||| ||| |||||| ||||||||||    
T  40220354 taagggcattgtttaaggaaccttaaaaaggaaattttgtcttgaaaatacaagtcaaatacttgtcaaagtcataa 40220430  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 1056624 - 1056557
Alignment:
Q  107 tcttgttaacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||| ||||||||| |||||| ||||||||||||||||  | ||||||||||| || ||||||||||    
T  1056624 tcttgctaacaagtgtcttaagagcattgtttaagaaactcataaaaagaaattttgccttgaaaata 1056557  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 20920888 - 20920949
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaata 174  Q
    ||||||||||| ||||| |||||||||||||| | |||| |||||| | |||||||||||||    
T  20920888 taacaagtgccctaaggacattgtttaagaaatctacaagaagaaactttgtcttgaaaata 20920949  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 14662970 - 14663049
Alignment:
Q  124 ttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataacc 203  Q
    ||||| |||||||||||| |||  | ||||| ||||||||  || ||||||||||| ||||||||||| |||| ||||||    
T  14662970 ttaagtgcattgtttaaggaactcataaaaaaaaattatgcattaaaaatataagtcaaacacttgttgaagttataacc 14663049  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 31006302 - 31006384
Alignment:
Q  105 ggtcttgttaacaagtgcctt--aagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaaca 185  Q
    ||||||||||||||||| |||  ||  ||||| |||||  |||| | |||||||||| ||||||||||||||||||| |||||    
T  31006302 ggtcttgttaacaagtgtcttttaaaagcattatttaaagaacccataaaaagaaatcatgtcttgaaaatataagtcaaaca 31006384  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 3135726 - 3135632
Alignment:
Q  125 taagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacacttgttaaagtcataaccttacaattttcaatgt 219  Q
    |||||| ||||||||||||||||| ||||||||| | |||| | |||||| |||| |||||  | | |||||||||||   |||||||| |||||    
T  3135726 taagggtattgtttaagaaaccaataaaaagaaagtttgtcataaaaatacaagtcaaacatatataaaagtcataactacacaatttttaatgt 3135632  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 38083448 - 38083404
Alignment:
Q  100 tttatggtcttgttaacaagtgccttaagggcattgtttaagaaa 144  Q
    ||||||||||||||||||||| | ||||| | |||||||||||||    
T  38083448 tttatggtcttgttaacaagtactttaagagtattgtttaagaaa 38083404  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 97920 - 97847
Alignment:
Q  113 taacaagtgccttaagggcattgtttaagaaaccaacaaaaagaaattatgtcttgaaaatataagttaaacac 186  Q
    ||||||||||| ||||||||||||||||| |||| | ||||  ||||| ||||||| ||||| |||| ||||||    
T  97920 taacaagtgccctaagggcattgtttaagcaacccataaaagcaaattttgtcttggaaatacaagtcaaacac 97847  T

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