View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_low_33 (Length: 232)

Name: NF7400_low_33
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_low_33
NF7400_low_33
[»] chr2 (3 HSPs)
chr2 (32-83)||(20621788-20621839)
chr2 (180-232)||(20621630-20621682)
chr2 (180-232)||(20372214-20372267)
[»] chr8 (4 HSPs)
chr8 (32-83)||(17664393-17664444)
chr8 (32-83)||(17683549-17683600)
chr8 (180-232)||(17664541-17664593)
chr8 (180-232)||(17683697-17683749)
[»] scaffold0027 (1 HSPs)
scaffold0027 (32-72)||(65470-65510)
[»] chr5 (1 HSPs)
chr5 (32-78)||(19223811-19223857)
[»] chr7 (1 HSPs)
chr7 (199-231)||(10440050-10440082)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 20621839 - 20621788
Alignment:
Q  32 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621839 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 20621788  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 20621682 - 20621630
Alignment:
Q  180 gaaaataatgggaaagagaagggtctgattcggaataaaaaatgaggtacttc 232  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  20621682 gaaaataatgggaaagagaagggtctgactcagaataaaaaatgaggtacttc 20621630  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 20372214 - 20372267
Alignment:
Q  180 gaaaataatgggaaagagaagggtctgattcggaat-aaaaaatgaggtacttc 232  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||||||||    
T  20372214 gaaaataatgggaaagagaagggtccgactcggaataaaaaaatgaggtacttc 20372267  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 17664393 - 17664444
Alignment:
Q  32 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 83  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17664393 gaaatttggaccactgcagaaaaccttcggacttattgacaacattgtacag 17664444  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 17683549 - 17683600
Alignment:
Q  32 gaaatttggaccactgccgaaaaccttcggacttattgacaacattgtacag 83  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17683549 gaaatttggaccactgcagaaaaccttcggacttattgacaacattgtacag 17683600  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 17664541 - 17664593
Alignment:
Q  180 gaaaataatgggaaagagaagggtctgattcggaataaaaaatgaggtacttc 232  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  17664541 gaaaataatgggaaagagaagggtccgactcggaataaaaaatgaggtacttc 17664593  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 17683697 - 17683749
Alignment:
Q  180 gaaaataatgggaaagagaagggtctgattcggaataaaaaatgaggtacttc 232  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  17683697 gaaaataatgggaaagagaagggtccgactcggaataaaaaatgaggtacttc 17683749  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 65470 - 65510
Alignment:
Q  32 gaaatttggaccactgccgaaaaccttcggacttattgaca 72  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  65470 gaaatttggaccactgccgaaaactttcggactcattgaca 65510  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 19223857 - 19223811
Alignment:
Q  32 gaaatttggaccactgccgaaaaccttcggacttattgacaacattg 78  Q
    ||||||||||||  ||| |||||| ||||||||||||||||||||||    
T  19223857 gaaatttggacccttgctgaaaactttcggacttattgacaacattg 19223811  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 10440082 - 10440050
Alignment:
Q  199 agggtctgattcggaataaaaaatgaggtactt 231  Q
    ||||||||| |||||||||||||||||||||||    
T  10440082 agggtctgactcggaataaaaaatgaggtactt 10440050  T

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