View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7400_low_34 (Length: 229)
Name: NF7400_low_34
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_34 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26079615 - 26079387
Alignment:
| Q |
1 |
cagaatagcaatcagatttttcatttactttcacatcccttctgtttctacatcccatattctccagaatctgagcattacagtttacacgggatatagc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26079615 |
cagaatagcaaccagatttttcatttactttcacatcccttctgtttctacatcccatattctccagaatctgagcattacagtttacacgggatatagc |
26079516 |
T |
|
| Q |
101 |
tactgaatagacaaaaacatggaaaatacctaattgcagtatctcctccgattctgcctctcacattatcctgactttctccatgacgagtaagtaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26079515 |
tactgaatagacaaaaacatggaaaatacctaattgcagtatctcctccgattctgcctctcacattatcctgactttctccatgacgagtaagtaatat |
26079416 |
T |
|
| Q |
201 |
tgggcgaggtgtgagatgtgtatttacct |
229 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
26079415 |
tgggcgaggtgtaagatgtgtatttacct |
26079387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 30596823 - 30596725
Alignment:
| Q |
126 |
atacctaattgcagtatctcctccgattctgcctctcacattatcctgactttctccatgacgagtaagtaatattgggcgaggtgtgagatgtgtatt |
224 |
Q |
| |
|
|||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
30596823 |
ataccttaatgcaggatctcctccaattctgcctctcacattatcctgactttctccatgccgagtgagtaatattgggcgtggtgtaagatgcgtatt |
30596725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University