View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_4 (Length: 515)
Name: NF7400_low_4
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 32 - 496
Target Start/End: Complemental strand, 46251199 - 46250735
Alignment:
| Q |
32 |
tagtcttttctagcatttatgttgtattgtaacatttactctttaagttatggtcatcatatgattgataccctaagctaaatggtgttctcttcttctt |
131 |
Q |
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| T |
46251199 |
tagtcttttctagcatttatgttgtattgtaacctttactctttaagttatggtcatcatatgattgataccctaagctaaatggtgttctcttcttctt |
46251100 |
T |
|
| Q |
132 |
catctctattttgatatgttcattattattgttaaccgactttaactgtagggattaaagctacgtgcaagaaaatttaataggaacaacaaagtgtcac |
231 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46251099 |
catctctatttttatatgttcattattattgttaaccgactttaacggtagggattaaagctacgtgcaagaaaatttaataggaacaacaaagtgtcac |
46251000 |
T |
|
| Q |
232 |
tttttatggagtcgaatgacaaaaattgataattttatatgaaaaaagaatatgtttaattctatattttattatggatagagtagtttgcaaactgtaa |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46250999 |
tttttatggagtcgaatgacaaaaattgataattttatatgaaaaaagaatatgtttaattctatattttattatggatagagtagtttgcaaactgtaa |
46250900 |
T |
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| Q |
332 |
tgaaatgccatgtagttggatttttccggtgacaaagtatgttgcagggcaggagaggctagggttattttttggcaacacgatgatccatgacatctca |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46250899 |
tgaaatgccatgtagttggatttttccggtgacaaagtatgttgtagggcaggagaggctagggttattttttggcaacacgatgatccatgacatctca |
46250800 |
T |
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| Q |
432 |
gttannnnnnnggctttggctgaatccaacaaatgaaggtctctagttattatcacttttatgat |
496 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46250799 |
gttatttttttggctttggctgaatctaacaaatgaaggtctctagttattatcacttttatgat |
46250735 |
T |
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