View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_low_6 (Length: 419)
Name: NF7400_low_6
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 27558271 - 27558656
Alignment:
| Q |
18 |
caacccaaattaaaactacctgatgcaattaatagttgttgctattatcaatacggtgagaaatctagagagagaaatgctagcaacacatattttaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27558271 |
caacccaaattaaaactacctgatgcaattaatagttgttgctattatcaatacggtgagaaatctagagagagaaatgctagcaacacacattttaata |
27558370 |
T |
|
| Q |
118 |
aatttttcaacacttccttccaacttacaaggcagagagacagaaatgagtcatagtgactgatagaaaagattgtgaaattcattcatttatttctagt |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27558371 |
aatttttcaacacttc----caacttacaaggcagagagacagaaatgagtcatagtgactgatagaaaagattgtgatattcattcatttatttctagt |
27558466 |
T |
|
| Q |
218 |
tatacatcagaagaactggaaaatacatatatttcttgctacaactctacatagactcatcaaatttcaatgaccaacctaaaagtataaatcaatagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27558467 |
tatacatcagaagaactggaaaatacatatatttcttgctacaactctacatagactcatcaaatttcaatgaccaacctaaaagtataaatcaatagaa |
27558566 |
T |
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| Q |
318 |
atgttctattgatataactctttctctggcacactcaaatcaatagtcaccaatcctaattcttcctcataactgaattccacctcttct |
407 |
Q |
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| T |
27558567 |
atgttctattgatataactctttctctggcacactcaaatcaatagtcaccaatcctgattcttcctcataactgaattccacctcttct |
27558656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 150 - 407
Target Start/End: Complemental strand, 42352540 - 42352269
Alignment:
| Q |
150 |
cagagagacagaaatgagtcatagtgac-----tgatagaaaagattgtgaaattcattcatttatttctagttatacatcagaagaactggaaaataca |
244 |
Q |
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| T |
42352540 |
cagagagacagaaataagtcatagtgaaaaaattgatataaaagattgtgattctcattcatttatttctagttatacattagaagaactagaaaataca |
42352441 |
T |
|
| Q |
245 |
tatatttcttgctacaactctacatagactcatcaaatttcaatgaccaacctaaaagtata---------aatcaatagaaatgttctattgatataac |
335 |
Q |
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| ||||||||||||| |||||||| |||||||||||||| |||| |||||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
42352440 |
aacatttcttgctacaggtctacataaactcatcaaatttccatgatcaacctaaaattatatgatttataaatcaatagaaatgttccattgatataac |
42352341 |
T |
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| Q |
336 |
tctttctctggcacactcaaatcaatagtcaccaatcctaattcttcctcataactgaattccacctcttct |
407 |
Q |
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| T |
42352340 |
tctttctccggcacactcaaatcaatagtcaccaatcctgattcttcctcgtaactgaattccacctcttct |
42352269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 50918400 - 50918239
Alignment:
| Q |
178 |
tgatagaaaagattgtgaaattcattcatttatttctagttatacatcagaagaactggaaaatacatatatttcttgctacaactctacatagactcat |
277 |
Q |
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|||||||||||||||||| |||||||| ||| ||||||||||||||| |||| || ||||||||| | ||||| ||||||| ||||||||| | ||| |
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| T |
50918400 |
tgatagaaaagattgtgatattcattcgtttgtttctagttatacattagaa---ctagaaaatacaaacatttcctgctacaggtctacataggcccat |
50918304 |
T |
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| Q |
278 |
caaatttcaatgaccaacctaa--------aagtataaatcaatagaaatgttctattgatataa |
334 |
Q |
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| T |
50918303 |
caaatttccatgaccaacctaaagtatttgatttataaatcaatagaaatgttccattgatataa |
50918239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 406
Target Start/End: Complemental strand, 50917673 - 50917573
Alignment:
| Q |
304 |
ataaatcaatagaaatgttctattgatataactctttctctggcacactcaaatcaatagtcaccaatcctaattcttcctcataactgaattccacctc |
403 |
Q |
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||||||| |||| ||||||| ||| ||||||||||||||||||| |||||||||||||| || |||| |||||||||| ||||||||||||||||| |
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| T |
50917673 |
ataaatccataggaatgttccattagtataactctttctctggcaa--tcaaatcaatagtccccgatcccgattcttcctcgtaactgaattccacctc |
50917576 |
T |
|
| Q |
404 |
ttc |
406 |
Q |
| |
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||| |
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| T |
50917575 |
ttc |
50917573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 50917771 - 50917696
Alignment:
| Q |
197 |
attcattcatttatttctagttatacatcagaagaactggaaaatacatatatttcttgctacaactctacataga |
272 |
Q |
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|||||||||||||||||||||||||||| ||||| ||| |||| ||| | ||||| ||||||| |||||||||| |
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| T |
50917771 |
attcattcatttatttctagttatacattagaaggactagaaactaccaacatttcctgctacaggtctacataga |
50917696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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