View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_high_1 (Length: 568)
Name: NF7401_high_1
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 55316450 - 55315882
Alignment:
| Q |
1 |
taggaaaatttcatgataacatcaagttcaagcagtacaatgtttaaaatgaaattgagttattaaccaagatgaagccttgtacttgatgtgagaaaca |
100 |
Q |
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| T |
55316450 |
taggaaaatttcatgataacatcaagttcaagcagtacaatgtttaaaatgaaattgagttattaaccaagatgaagccttgtacttgatgtgagaaaca |
55316351 |
T |
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| Q |
101 |
taataatgacattaacctttatgtaatgtaacactctgtaggaaaattagtcaacaaaggagaaatgctgaagggaattatgtaggcttgtagtatttag |
200 |
Q |
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| T |
55316350 |
taataatgacattaacctttatgtaatgtaacactctgtaggaaaattagtcaacaaaggagaaatgctgaagggaattatgtaggcttgtagtatttag |
55316251 |
T |
|
| Q |
201 |
tgggtacgaatggcatttttgtgacaactccttcattcgcttttcctcgaataatgatctttactttggtacctgctttgtgcaatccagattttacata |
300 |
Q |
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| T |
55316250 |
tgggtacgaatggcatttttgtgacaactccttcattcgcttttcctcgaataattatctttactttggtacctgctttgtgcaatccagattttacata |
55316151 |
T |
|
| Q |
301 |
tcccatagctatgttcttcttgagacaaggactgaatccaccactagtgacttcaccaatgttgttgcctccttcatcttgaatctcactgtggcttcta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55316150 |
tcccatagctatgttcttcttgagacaaggactgaatccaccactagtgacttcaccaatgttgttgcctccttcatcttgaatctcactgtggcttcta |
55316051 |
T |
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| Q |
401 |
gcaggtggaccagatgaaatgaaaccgacacgccttatggaaggaccatctgcgagctgtttcaagataacatcagctcctagaaaaccaccttctgctc |
500 |
Q |
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| T |
55316050 |
gcaggtggaccagatgaaatgaaaccgacacgccttatggaaggaccatctgcgagctgtttcaagataacatcagctcctagaaaaccaccttctgctc |
55315951 |
T |
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| Q |
501 |
ttctcctcttacctatagcccatgtcagtcctgcctcaattggtgtaatgtgatg-tccatctcattgc |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
55315950 |
ttctcctcttacctatagcccatgtcagtcctgcctcaattggtgtaatgtgctgttccatgtcattgc |
55315882 |
T |
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