View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7401_high_5 (Length: 415)

Name: NF7401_high_5
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7401_high_5
NF7401_high_5
[»] chr2 (1 HSPs)
chr2 (85-405)||(18031190-18031506)
[»] chr4 (1 HSPs)
chr4 (97-260)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (85-259)||(29642020-29642198)
chr3 (129-179)||(4803977-4804027)
chr3 (129-176)||(10535703-10535750)
chr3 (262-296)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (91-160)||(22002453-22002522)
chr7 (280-405)||(22002144-22002269)
[»] chr8 (2 HSPs)
chr8 (89-185)||(32309433-32309529)
chr8 (265-402)||(32309130-32309266)
[»] chr6 (4 HSPs)
chr6 (89-185)||(33364663-33364759)
chr6 (264-314)||(33164133-33164183)
chr6 (265-402)||(33364360-33364496)
chr6 (262-297)||(22208490-22208525)
[»] chr1 (7 HSPs)
chr1 (89-185)||(30330131-30330227)
chr1 (264-314)||(24208117-24208167)
chr1 (264-314)||(45027897-45027947)
chr1 (264-314)||(45032745-45032795)
chr1 (265-402)||(30330394-30330530)
chr1 (129-176)||(25626139-25626186)
chr1 (262-296)||(9934245-9934279)
[»] scaffold0009 (1 HSPs)
scaffold0009 (129-176)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 85 - 405
Target Start/End: Original strand, 18031190 - 18031506
Alignment:
Q  85 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  18031190 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttaaaagagatataaaatgttttcaatgtgataacagaa 18031289  T
Q  185 aacaatatgacaata-ttcttttcataatgtaaacataatggaatgagctttcagttttcttgtacccacacctcacatcattttggcatcatgctcttc 283  Q
    || |||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||||||||||    
T  18031290 aagaatatgacaatacttcttttcataatgtaaatataatggaatgagcttccaattttcttgtccccacacctcacatctttttgacatcatgctcttc 18031389  T
Q  284 atatggctacttatttgctaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattctcaac 383  Q
    ||||| ||||||||||| |||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  18031390 atatgactacttatttgttaattattcttcc-----aacaattagctcttcaaacaccaaatacaatttttttaccaaaaacgtccctcctattctcaac 18031484  T
Q  384 ttaaagtctttgggtgtctctg 405  Q
    ||||||||||  ||||||||||    
T  18031485 ttaaagtcttctggtgtctctg 18031506  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 97 - 260
Target Start/End: Original strand, 55156474 - 55156642
Alignment:
Q  97 caagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaaacaatatgaca 196  Q
    |||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  55156474 caagtttattccatttttcttcattttcgcaatcacattaaaacacaatttgaaagagatataaaatgttttcaatgtgataacggaaaagaatatgaca 55156573  T
Q  197 ata-ttcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctcac 260  Q
    ||| ||||||  ||||    |||||||| ||||||||||||||   |||||||||| | ||||||||||    
T  55156574 atacttctttctataatttctgtaaacaaaatggaatgagcttctggttttcttgtcctcacacctcac 55156642  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 29642020 - 29642198
Alignment:
Q  85 gcacataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaa 184  Q
    ||||| ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||    
T  29642020 gcacacaaatctcaagctttttccacttttctttattttcgcaatcacattaaaacacaatttaaaagagatatacaatgttttcaatgtgataacggaa 29642119  T
Q  185 aacaatatgacaa-tattcttttcataa----tgtaaacataatggaatgagctttcagttttcttgtacccacacctca 259  Q
    || |||||||||| | |||||| |||||    |||||||| ||||||| |||||| |||||||||||| | |||||||||    
T  29642120 aataatatgacaattcttctttccataatctttgtaaacaaaatggaa-gagcttccagttttcttgtcctcacacctca 29642198  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 4804027 - 4803977
Alignment:
Q  129 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataa 179  Q
    |||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  4804027 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtgataa 4803977  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 10535750 - 10535703
Alignment:
Q  129 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 176  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  10535750 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 10535703  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 48101561 - 48101527
Alignment:
Q  262 tcattttggcatcatgctcttcatatggctactta 296  Q
    ||||||||||||||||||||||| |||||||||||    
T  48101561 tcattttggcatcatgctcttcaaatggctactta 48101527  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 22002522 - 22002453
Alignment:
Q  91 aaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataa 160  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||    
T  22002522 aaatctcaagcttattccacttttattcattttcctaatcaaattaaaacaaaatttgaaagagatataa 22002453  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 405
Target Start/End: Complemental strand, 22002269 - 22002144
Alignment:
Q  280 cttcatatggctacttatttgctaattattcttccaaccaa-acaattagctcttcaaacaccaaatacaattttttaaccaaaaatgtccctccaattc 378  Q
    ||||||||| | ||||||||| ||| ||||||||||||||| | || |||||||| |||| |||| ||| |||  ||| | ||| || | ||||| ||||    
T  22002269 cttcatatgaccacttatttgttaaatattcttccaaccaacataagtagctcttaaaaccccaactacgattccttatcaaaatat-ttcctcctattc 22002171  T
Q  379 tcaacttaaagtctttgggtgtctctg 405  Q
    ||| ||||||||| | |||||||||||    
T  22002170 tcatcttaaagtcatcgggtgtctctg 22002144  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 32309529 - 32309433
Alignment:
Q  89 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 185  Q
    ||||||| |||||| | |||| |||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32309529 ataaatcacaagctcactccatttttctccaattttgtaatcacattaaaacacaatttgaaagagatattaaatgttttcaatgtgataacggaaa 32309433  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 32309266 - 32309130
Alignment:
Q  265 ttttggcatcatgctcttcatatggctacttatttgctaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 364  Q
    ||||||||||| || ||||| |||||||||||| |  |||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  32309266 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 32309168  T
Q  365 tgtccctccaattctcaacttaaagtctttgggtgtct 402  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  32309167 tctccatcctactctcatcttaaagtctttggatgtct 32309130  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 33364759 - 33364663
Alignment:
Q  89 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 185  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  33364759 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 33364663  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 33164133 - 33164183
Alignment:
Q  264 attttggcatcatgctcttcatatggctacttatttgctaattattcttcc 314  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  33164133 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 33164183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 33364496 - 33364360
Alignment:
Q  265 ttttggcatcatgctcttcatatggctacttatttgctaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 364  Q
    ||||||||||| || ||||| |||||||||||| |  |||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  33364496 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 33364398  T
Q  365 tgtccctccaattctcaacttaaagtctttgggtgtct 402  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  33364397 tctccatcctactctcatcttaaagtctttggttgtct 33364360  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 22208525 - 22208490
Alignment:
Q  262 tcattttggcatcatgctcttcatatggctacttat 297  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22208525 tcattttggcatcatgctcttcaaatggctacttat 22208490  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 30330131 - 30330227
Alignment:
Q  89 ataaatctcaagcttattccacttttcttcattttcttaatcacattaaaacacaatttgaaagagatataaaatgttttcaacgtgataacagaaa 185  Q
    ||||||| |||||| | |||| |||||| || |||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||    
T  30330131 ataaatcacaagctcactccatttttctccaatttcgtaatcacattaaaacacaatttgaaaaagatattaaatgttttcaatgtgataacggaaa 30330227  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 24208117 - 24208167
Alignment:
Q  264 attttggcatcatgctcttcatatggctacttatttgctaattattcttcc 314  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  24208117 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 24208167  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 45027897 - 45027947
Alignment:
Q  264 attttggcatcatgctcttcatatggctacttatttgctaattattcttcc 314  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  45027897 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45027947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 45032745 - 45032795
Alignment:
Q  264 attttggcatcatgctcttcatatggctacttatttgctaattattcttcc 314  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||    
T  45032745 attttggcatcatgcacttcacatggcaacttatttgctaaatattcttcc 45032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 30330394 - 30330530
Alignment:
Q  265 ttttggcatcatgctcttcatatggctacttatttgctaattattcttccaaccaaacaattagctcttcaaacaccaaatacaattttttaaccaaaaa 364  Q
    ||||||||||| || ||||| |||||||||||| |  |||  || || || |||||  || ||||||||||||||||||  |||||| | || |||||||    
T  30330394 ttttggcatcacgcacttcaaatggctacttatctcttaaacatcctacccaccaagaaactagctcttcaaacaccaaccacaattctcta-ccaaaaa 30330492  T
Q  365 tgtccctccaattctcaacttaaagtctttgggtgtct 402  Q
    | ||| ||| | ||||| |||||||||||||| |||||    
T  30330493 tctccatcctactctcatcttaaagtctttggctgtct 30330530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 25626186 - 25626139
Alignment:
Q  129 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 176  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  25626186 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 25626139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 9934279 - 9934245
Alignment:
Q  262 tcattttggcatcatgctcttcatatggctactta 296  Q
    ||||||||||||||||||||||| |||||||||||    
T  9934279 tcattttggcatcatgctcttcaaatggctactta 9934245  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 89640 - 89687
Alignment:
Q  129 tcacattaaaacacaatttgaaagagatataaaatgttttcaacgtga 176  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  89640 tcacattaaaacacaatttgaacgtgaaataaaatgttttcaatgtga 89687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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