View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_high_8 (Length: 336)
Name: NF7401_high_8
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 384736 - 384409
Alignment:
| Q |
1 |
tattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggctttttagggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384736 |
tattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggctttttagggat |
384637 |
T |
|
| Q |
101 |
tttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttcttcataactcctcaattannnnnnnactttgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
384636 |
tttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacagttagttcttcataactcctcaactatttttttactttgttgt |
384537 |
T |
|
| Q |
201 |
tgttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcgggttggagatcattagtcagaatgttggaggtgacttcgaaccgttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
384536 |
tgttgttgatgtttatattcaaattatcattaggtagttgtgaatcgtgtcggattggagatcattagtcggaatgttggaggtgacttcgaaccgttgt |
384437 |
T |
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| Q |
301 |
tcctatgatcaatagcttccttcttctc |
328 |
Q |
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| T |
384436 |
tcctatgatcaatagcttccttcttctc |
384409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 390113 - 389947
Alignment:
| Q |
1 |
tattcagaaatataatcgtctttttggtgaacaatctaatgctagtattgctgagagattacgtgatcttccgtttcttttaagaaggctttttagggat |
100 |
Q |
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|||||| | |||||| ||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||| | ||||||||||| |||| |
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| T |
390113 |
tattcaaagatataaccgtgtttttggccaacaatctaatgctagtattgttcagagattacgtgatcttccttttcttttgaaaaggctttttaaggat |
390014 |
T |
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| Q |
101 |
tttgctaaccctaatgtgtcttttcctcttgttatcagagctcgtatttttgttacggttagttctt |
167 |
Q |
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| T |
390013 |
tttgttaaccctaatacttctcttcctcttgttattagagctcgtgttttcattacggttagttctt |
389947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 389908 - 389857
Alignment:
| Q |
194 |
ttgttgttgttgttgatgtttatattcaaatt--atcattaggtagttgtga |
243 |
Q |
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||||||||||||||| ||||||| |||||||| ||||||||||||| |||| |
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| T |
389908 |
ttgttgttgttgttgttgtttatgttcaaattaaatcattaggtagtcgtga |
389857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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