View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_low_12 (Length: 384)
Name: NF7401_low_12
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 41744174 - 41744501
Alignment:
| Q |
15 |
acatcaataggtttaatactttataatataatcnnnnnnnnnactattcttatggcttatcaattcatgtttacttcttgtgcatagtcacataatatgg |
114 |
Q |
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| T |
41744174 |
acatcaataggtttaatactttataatataatctttttttt-actattcttatggcttatcaattcatgtttacttcttgtgcatagtcacataatatgg |
41744272 |
T |
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| Q |
115 |
atttaaatgagatagtaatgttattaaatatgaatcaaaatgatgtagtcatatcgattttagttatcatatgactttgtttttcttttgaaaatcgatc |
214 |
Q |
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| T |
41744273 |
atttaaatgagatagtcatgttattaaatatggatcaaaatgatgtagtcatatcgattttagttatcatatgactttgtttttcttctgaaaatcgatc |
41744372 |
T |
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| Q |
215 |
taaactgcaccggaaacatcttgatagtttaatcatttaacacactacaaacaaaaagaatatgcccaagattgataagtaatatcttaccttgttagct |
314 |
Q |
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| T |
41744373 |
taaactgcaccggaaacatcttgatagtttaatcatttgacacactacaaacaaaaagaatatgcccaagattgataagtaatatcttaccttgttagct |
41744472 |
T |
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| Q |
315 |
aatataatgtgattgaattagaagctaat |
343 |
Q |
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| T |
41744473 |
aatataatgtgattgaattagaagctaat |
41744501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 41746759 - 41746804
Alignment:
| Q |
339 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaatt |
384 |
Q |
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| T |
41746759 |
ctaatcaagacgaaggatgtcaaaatatcaaatcaactgattaatt |
41746804 |
T |
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