View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_low_13 (Length: 354)
Name: NF7401_low_13
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 352
Target Start/End: Complemental strand, 40989677 - 40989326
Alignment:
| Q |
2 |
aatgagat-ggacatcaatacgggtcttatcaggttattgtatatataaatgatttcaaaaagatttttaaaaaagttagctaagatgaattggcttcaa |
100 |
Q |
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| T |
40989677 |
aatgagataggacatcaataagggtcttatcaggttattgtatatataaatgatttcaaaaagatttttaaaaaagttagctaagatgaattggcttcaa |
40989578 |
T |
|
| Q |
101 |
cctccaagttaaatgaaattataccctaactccgttatctgtgatgagatccaagaatccaaaatcgatagcgaatggtcataatcttttattagacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40989577 |
cctccaagttaaatgaaattataccctaactccgttatctttgatgagatccgagaatccgaaatcgatagcgaatggtcataatcttttattagacaca |
40989478 |
T |
|
| Q |
201 |
ctttagtatctgcataggaagcaccatgcataagacagacagatgaaatgttcagtcttgtataccttttgatggattgattgtaaaatcctttatcatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
40989477 |
ctttagtatctgcataggaagcaccatgcataagacagacagatgaaatgttcagtcttatatacctttcgatggattgattgtaaaatcctttatcatg |
40989378 |
T |
|
| Q |
301 |
agacactacagactttattttcctcttagtttctcattctcagatttttctt |
352 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40989377 |
agacacttcagactttactttcctcttagtttctcattctcagatttttctt |
40989326 |
T |
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