View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_low_20 (Length: 255)
Name: NF7401_low_20
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 41746782 - 41747005
Alignment:
| Q |
13 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacatggttcaacacatattttataactcaatctt |
112 |
Q |
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| T |
41746782 |
aatatcaaatcaactgattaatttatttactttataacagtattttattcgagtgaagtgttaacaacacggttcaacacatattttataactcaatctt |
41746881 |
T |
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| Q |
113 |
ttattagttaaaattcatataaatctcatataaatttggtgggactcctatgaattgtaactaataataagaaagaccgtggtaaagagtgtgtttctaa |
212 |
Q |
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| T |
41746882 |
ttattagttaaaattcatctaaatctcatataaatttggtgggactcttatgaattgtaactaataataaaaaagaccgtggtaaagagtgtgtttctaa |
41746981 |
T |
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| Q |
213 |
cgttattctttattgggtagtttg |
236 |
Q |
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| T |
41746982 |
cgttattctttattgggtagtttg |
41747005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 33029563 - 33029523
Alignment:
| Q |
137 |
ctcatataaatttggtgggactcctatgaattgtaactaat |
177 |
Q |
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| T |
33029563 |
ctcatataaatttggtgggacttatatgaattttaactaat |
33029523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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