View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7401_low_4 (Length: 562)

Name: NF7401_low_4
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7401_low_4
NF7401_low_4
[»] chr1 (25 HSPs)
chr1 (9-541)||(30476892-30477423)
chr1 (458-562)||(28220671-28220776)
chr1 (458-562)||(28223866-28223971)
chr1 (458-562)||(37033731-37033836)
chr1 (416-562)||(4553092-4553239)
chr1 (508-562)||(11348171-11348225)
chr1 (458-562)||(44454779-44454883)
chr1 (511-562)||(26644469-26644520)
chr1 (416-562)||(31658816-31658962)
chr1 (458-562)||(37070245-37070349)
chr1 (455-562)||(193010-193118)
chr1 (458-548)||(29652307-29652396)
chr1 (508-562)||(49918019-49918073)
chr1 (458-562)||(13598878-13598982)
chr1 (510-562)||(3156539-3156591)
chr1 (515-562)||(3189027-3189074)
chr1 (515-562)||(3197844-3197891)
chr1 (515-562)||(3206662-3206709)
chr1 (511-562)||(19361008-19361059)
chr1 (511-562)||(19365864-19365915)
chr1 (515-562)||(20762348-20762395)
chr1 (508-562)||(10924893-10924947)
chr1 (508-562)||(37879553-37879607)
chr1 (525-562)||(3282184-3282221)
chr1 (525-561)||(9986895-9986931)
[»] chr7 (29 HSPs)
chr7 (415-562)||(4585738-4585885)
chr7 (433-562)||(47674387-47674517)
chr7 (433-562)||(47676580-47676710)
chr7 (415-562)||(14070278-14070424)
chr7 (415-562)||(14380306-14380452)
chr7 (458-562)||(27347543-27347647)
chr7 (455-541)||(34311285-34311371)
chr7 (485-562)||(32358498-32358575)
chr7 (458-562)||(2389694-2389798)
chr7 (508-562)||(4538995-4539049)
chr7 (462-562)||(18126268-18126368)
chr7 (485-562)||(49092169-49092245)
chr7 (515-562)||(23554716-23554763)
chr7 (458-562)||(33331965-33332070)
chr7 (456-562)||(43863878-43863985)
chr7 (511-562)||(25767399-25767450)
chr7 (508-562)||(4796235-4796289)
chr7 (508-562)||(6360574-6360628)
chr7 (458-562)||(2647213-2647317)
chr7 (511-560)||(24789522-24789571)
chr7 (458-562)||(79868-79970)
chr7 (511-562)||(2479813-2479864)
chr7 (515-562)||(4178451-4178498)
chr7 (515-562)||(19495646-19495693)
chr7 (511-562)||(21983720-21983771)
chr7 (508-562)||(48489100-48489154)
chr7 (508-562)||(48599940-48599994)
chr7 (511-560)||(1532999-1533048)
chr7 (511-559)||(21811834-21811882)
[»] chr4 (41 HSPs)
chr4 (415-562)||(12745861-12746007)
chr4 (415-562)||(9927905-9928052)
chr4 (416-562)||(12739983-12740128)
chr4 (416-562)||(12748189-12748334)
chr4 (415-562)||(3754590-3754736)
chr4 (457-562)||(5429298-5429404)
chr4 (455-562)||(54882438-54882546)
chr4 (455-562)||(26363664-26363771)
chr4 (458-562)||(6655357-6655462)
chr4 (458-562)||(16628388-16628491)
chr4 (458-562)||(3778026-3778130)
chr4 (428-562)||(34570858-34570983)
chr4 (508-562)||(6742981-6743035)
chr4 (515-562)||(52095805-52095852)
chr4 (501-562)||(3909760-3909821)
chr4 (415-456)||(29254141-29254182)
chr4 (458-562)||(36314746-36314850)
chr4 (458-562)||(36328955-36329059)
chr4 (501-562)||(40630430-40630490)
chr4 (458-562)||(16622809-16622912)
chr4 (511-562)||(5148155-5148206)
chr4 (496-562)||(5268752-5268819)
chr4 (507-562)||(5370520-5370575)
chr4 (511-562)||(13992732-13992783)
chr4 (508-562)||(2209172-2209226)
chr4 (458-562)||(25861548-25861653)
chr4 (508-562)||(26176068-26176122)
chr4 (525-562)||(8689079-8689116)
chr4 (525-562)||(27417613-27417650)
chr4 (460-562)||(54867656-54867758)
chr4 (515-562)||(56179069-56179116)
chr4 (458-561)||(10047843-10047947)
chr4 (511-561)||(31495756-31495806)
chr4 (508-562)||(37740296-37740350)
chr4 (508-562)||(46570188-46570242)
chr4 (525-562)||(5143738-5143775)
chr4 (525-562)||(5396273-5396310)
chr4 (525-562)||(41639034-41639071)
chr4 (501-562)||(50674508-50674568)
chr4 (458-562)||(18377816-18377920)
chr4 (458-562)||(38151953-38152056)
[»] chr5 (22 HSPs)
chr5 (416-562)||(32636402-32636547)
chr5 (454-562)||(42428862-42428971)
chr5 (416-562)||(37438724-37438869)
chr5 (454-562)||(42426679-42426788)
chr5 (431-561)||(16651067-16651198)
chr5 (485-562)||(212991-213068)
chr5 (456-562)||(40146667-40146773)
chr5 (458-562)||(11916487-11916591)
chr5 (485-562)||(5057478-5057555)
chr5 (416-561)||(28751027-28751174)
chr5 (458-562)||(12083693-12083797)
chr5 (458-562)||(14520707-14520811)
chr5 (511-562)||(9352903-9352954)
chr5 (454-549)||(13487820-13487916)
chr5 (511-562)||(24136337-24136388)
chr5 (519-562)||(30683352-30683395)
chr5 (511-561)||(9789663-9789713)
chr5 (503-541)||(11181412-11181450)
chr5 (511-561)||(18442087-18442137)
chr5 (525-562)||(30683269-30683306)
chr5 (415-443)||(19634111-19634139)
chr5 (511-559)||(28807171-28807219)
[»] chr3 (39 HSPs)
chr3 (433-562)||(29812657-29812787)
chr3 (435-551)||(29810464-29810581)
chr3 (458-562)||(51398445-51398550)
chr3 (455-562)||(31340704-31340812)
chr3 (483-560)||(46173161-46173238)
chr3 (458-562)||(21711679-21711783)
chr3 (457-562)||(36018262-36018368)
chr3 (457-562)||(4569352-4569457)
chr3 (458-562)||(49200113-49200218)
chr3 (458-562)||(35925968-35926072)
chr3 (458-562)||(36029571-36029674)
chr3 (458-562)||(40735048-40735151)
chr3 (496-562)||(6096262-6096328)
chr3 (485-562)||(27027184-27027261)
chr3 (501-562)||(44331891-44331952)
chr3 (458-562)||(27038519-27038623)
chr3 (458-562)||(30709301-30709404)
chr3 (498-562)||(40734156-40734220)
chr3 (500-562)||(8370036-8370098)
chr3 (458-562)||(5236901-5237005)
chr3 (501-562)||(16264826-16264887)
chr3 (485-562)||(54593133-54593210)
chr3 (485-562)||(55302627-55302703)
chr3 (507-562)||(34490683-34490738)
chr3 (496-562)||(47923445-47923511)
chr3 (458-562)||(39032060-39032164)
chr3 (501-562)||(44331232-44331293)
chr3 (483-562)||(1735835-1735913)
chr3 (515-562)||(7764128-7764175)
chr3 (503-562)||(23410774-23410833)
chr3 (525-562)||(40592354-40592391)
chr3 (484-562)||(8127107-8127186)
chr3 (511-562)||(37726152-37726203)
chr3 (511-561)||(2671160-2671210)
chr3 (511-560)||(1306459-1306508)
chr3 (525-562)||(3393293-3393330)
chr3 (525-562)||(5258589-5258626)
chr3 (525-562)||(43404395-43404432)
chr3 (501-541)||(24694735-24694775)
[»] chr8 (25 HSPs)
chr8 (433-555)||(33351765-33351888)
chr8 (483-562)||(15212430-15212510)
chr8 (485-562)||(22975963-22976040)
chr8 (458-562)||(42435653-42435758)
chr8 (501-562)||(30143005-30143066)
chr8 (501-562)||(43036086-43036147)
chr8 (490-562)||(11383440-11383512)
chr8 (418-562)||(4743638-4743783)
chr8 (458-562)||(5701994-5702099)
chr8 (508-562)||(4733495-4733549)
chr8 (501-562)||(40221210-40221270)
chr8 (510-562)||(27810970-27811022)
chr8 (519-562)||(12703083-12703126)
chr8 (508-562)||(4731328-4731382)
chr8 (501-562)||(10014822-10014883)
chr8 (483-562)||(19175273-19175352)
chr8 (511-562)||(1261510-1261561)
chr8 (515-562)||(1746663-1746710)
chr8 (511-562)||(7412805-7412856)
chr8 (515-562)||(34254773-34254820)
chr8 (515-562)||(34256949-34256996)
chr8 (511-561)||(2627414-2627464)
chr8 (456-509)||(3051631-3051684)
chr8 (458-554)||(4456494-4456590)
chr8 (525-561)||(4759643-4759679)
[»] chr2 (27 HSPs)
chr2 (415-562)||(17863770-17863916)
chr2 (455-562)||(45726423-45726530)
chr2 (458-562)||(39284516-39284621)
chr2 (496-562)||(33528177-33528243)
chr2 (509-562)||(2837288-2837341)
chr2 (458-562)||(23077987-23078091)
chr2 (503-562)||(36318453-36318513)
chr2 (515-562)||(29867556-29867603)
chr2 (515-562)||(34389328-34389375)
chr2 (477-560)||(35447547-35447630)
chr2 (458-562)||(8389666-8389767)
chr2 (458-562)||(10706768-10706872)
chr2 (489-562)||(14698556-14698629)
chr2 (515-562)||(6595439-6595486)
chr2 (491-562)||(13569808-13569879)
chr2 (511-562)||(28258746-28258797)
chr2 (515-562)||(36988520-36988567)
chr2 (458-562)||(17865655-17865759)
chr2 (458-562)||(21630422-21630526)
chr2 (525-562)||(39483354-39483391)
chr2 (491-562)||(20522699-20522771)
chr2 (511-562)||(25410119-25410170)
chr2 (511-562)||(30833017-30833068)
chr2 (511-561)||(6266370-6266420)
chr2 (511-560)||(3492232-3492281)
chr2 (511-560)||(9295957-9296006)
chr2 (525-561)||(11098496-11098532)
[»] chr6 (21 HSPs)
chr6 (455-562)||(21593065-21593172)
chr6 (458-562)||(31085988-31086091)
chr6 (458-562)||(5017011-5017114)
chr6 (516-562)||(9183454-9183500)
chr6 (508-562)||(22964175-22964229)
chr6 (508-562)||(23824164-23824218)
chr6 (483-562)||(31979994-31980073)
chr6 (511-562)||(5757047-5757098)
chr6 (511-562)||(23896810-23896861)
chr6 (511-562)||(22709498-22709549)
chr6 (525-560)||(30125127-30125162)
chr6 (516-562)||(3809368-3809414)
chr6 (508-562)||(10076757-10076811)
chr6 (508-562)||(21272555-21272609)
chr6 (525-562)||(603681-603718)
chr6 (511-560)||(2171959-2172008)
chr6 (525-562)||(5571847-5571884)
chr6 (525-562)||(24435555-24435592)
chr6 (524-560)||(6438939-6438975)
chr6 (525-561)||(11857422-11857458)
chr6 (511-559)||(28155166-28155214)
[»] scaffold0286 (1 HSPs)
scaffold0286 (458-562)||(10959-11064)
[»] scaffold0066 (1 HSPs)
scaffold0066 (459-562)||(20859-20963)
[»] scaffold0014 (1 HSPs)
scaffold0014 (457-562)||(80945-81050)
[»] scaffold0466 (1 HSPs)
scaffold0466 (457-541)||(6749-6833)
[»] scaffold0176 (1 HSPs)
scaffold0176 (503-562)||(17708-17767)
[»] scaffold0036 (1 HSPs)
scaffold0036 (458-562)||(86066-86168)
[»] scaffold0087 (1 HSPs)
scaffold0087 (511-562)||(36401-36452)
[»] scaffold0510 (1 HSPs)
scaffold0510 (511-562)||(1179-1230)
[»] scaffold0098 (1 HSPs)
scaffold0098 (511-562)||(45676-45727)
[»] scaffold0006 (2 HSPs)
scaffold0006 (458-562)||(6163-6267)
scaffold0006 (525-562)||(2971-3008)
[»] scaffold0002 (1 HSPs)
scaffold0002 (525-562)||(434218-434255)


Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 541
Target Start/End: Complemental strand, 30477423 - 30476892
Alignment:
Q  9 gaagaatattcgaggattacttgtaaaattggtcacttttgagttttcatagtcagatgagacccttttttggcattgcaagaaatgtgaactatgtggt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30477423 gaagaatattcgaggattacttgtaaaattggtcacttttgagttttcatagtcagatgagacccttttttggcattgcaagaaatgtgaacgatgtggt 30477324  T
Q  109 cccaagagtgaagttttgtagaaacgattagatggttattgaaagggaaaatgtggtcattaatcatccaattatgttcctgatggagaaacagtgtcca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30477323 cccaagagtgaagttttgtagaaacgattagatggttattgaaagggaaaatgtggtcattaatcatccaattatgttcctgatggagaaacagtgtcca 30477224  T
Q  209 ttatgtaatttgagattacactaatgtgcatctgatccattaaataattgctaaattgaactaatgattaatttaagagagtagaaaaggcctgataaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30477223 ttatgtaatttgagattacactaatgtgcatctgatccattaaataattgctaaattgaactaatgattaatttaagagagtagaaaaggcctgataaat 30477124  T
Q  309 ttgttttttaattcacttcnnnnnnnnnnnnaaattatctctgaagttattgtaattaagcttcttttattttaatgaaatcataaccgagcaatgttta 408  Q
    |||||||||||||||| ||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30477123 ttgttttttaattcacgtc-tttttctttgtaaattatctctgaagttattgtaattaagcttcttttattttaatgaaatcataaccgagcaatgttta 30477025  T
Q  409 taggacttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat 508  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  30477024 tagaacttgttgtgtatgtcttcaaaattgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgtgtcacgattttctaggcagtgggcat 30476925  T
Q  509 gttttgcagggtgtctaatcgtggcacgatttt 541  Q
    ||||||||||||||||||||||| |||||||||    
T  30476924 gttttgcagggtgtctaatcgtgacacgatttt 30476892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 28220776 - 28220671
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagca-tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||| || | || || |||| |||||||| ||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  28220776 aatcgtgacacgaattggcaaacgtgtcatgattttcttggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacac 28220677  T
Q  557 gatttt 562  Q
    ||||||    
T  28220676 gatttt 28220671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 28223971 - 28223866
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagca-tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||| || | || || |||| |||||||| ||||||||| | |||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  28223971 aatcgtgacacgaattggcaaacgtgtcatgattttcttggcagtgagaactgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacac 28223872  T
Q  557 gatttt 562  Q
    ||||||    
T  28223871 gatttt 28223866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 37033836 - 37033731
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  || ||| ||||||||||| | | |  ||||||||||||||||||||||| ||||||| ||||||||| || |||| ||||||    
T  37033836 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcgtgacacgattttcgggaaacatgacac 37033737  T
Q  557 gatttt 562  Q
    ||||||    
T  37033736 gatttt 37033731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 416 - 562
Target Start/End: Complemental strand, 4553239 - 4553092
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttg 514  Q
    ||||||||||| ||||||| ||||||| ||| |||   |  |||||||||||||||||   ||||| ||||||||||  | | || |||| |||||||||    
T  4553239 tgttgtgtatgccttcaaaattgtgaatttgggaaaacttggaatcgtgacacgatttgtgaagcgtgtcacgatttcgcaatgccgtgaacatgttttg 4553140  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| || ||||||| |||||||||| |||||||||| | ||||||    
T  4553139 cagggtatccaatcgtgacacgattttgagaaaacgtgatatgatttt 4553092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 11348171 - 11348225
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  11348171 tgttttgcagggtgtctaatcgtgacacgattttggagaaacgtgacacgatttt 11348225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 44454779 - 44454883
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  |||||| ||||||||||  ||| || | ||||||||||| | | ||||| ||||||| |||||||||||| |||||||||||    
T  44454779 aatcgtgacacgatttcataagcgtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtgacacgattttggggaaacgtgacac 44454877  T
Q  557 gatttt 562  Q
    ||||||    
T  44454878 gatttt 44454883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 26644469 - 26644520
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  26644469 tttgcacggtgtcaaatcgtggcacgattttgtgaaaacgtgacacgatttt 26644520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 562
Target Start/End: Original strand, 31658816 - 31658962
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttg 514  Q
    ||||||||||  ||||||| |||||||||||  ||  | |  ||||||||||||||||  || ||| ||||||||||| | | |  | |||| |||||||    
T  31658816 tgttgtgtattccttcaaaattgtgaagttggaaaacagagaaatcgtgacacgatttcataggcgtgtcacgattttgcaatgtcgagagc-tgttttg 31658914  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||    
T  31658915 cagggtgcccaatcgtgacacgattttgggaaaacgtgacacaatttt 31658962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 37070349 - 37070245
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||||| |||||| ||||||| |||  || ||||   ||||||| ||||||||||||||||||||||||    
T  37070349 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcaaggtgctcaatcgtgtcacgattttgggaaaacgtgacac 37070251  T
Q  557 gatttt 562  Q
    ||||||    
T  37070250 gatttt 37070245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 562
Target Start/End: Original strand, 193010 - 193118
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttcta-ggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtga 553  Q
    ||||| ||||||| ||||| | || || |||||||||||  | ||||||||||||| ||||||||||||| |||| || ||| ||||||| |||||||||    
T  193010 aagaaacgtgacatgatttggcaatcgtgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcatgacacaattttggaaaaacgtga 193109  T
Q  554 cacgatttt 562  Q
     || |||||    
T  193110 taccatttt 193118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 29652396 - 29652307
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaa 548  Q
    |||||||| |||||||  | | || |||||||||||| |||||||||||||| |||||||||||   ||||||| ||||||||||| ||||    
T  29652396 aatcgtgatacgatttcatcaacgtgtcacgattttc-aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaa 29652307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 49918019 - 49918073
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| | ||||||| ||||||||| | ||||||||||||||||||    
T  49918019 tgttttgcagggtgcccaatcgtgacacgattttcgaaaaacgtgacacgatttt 49918073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 13598982 - 13598878
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||| |||||||| ||||||| |||| || ||| |  ||||||| || ||||||||||||| |||||||    
T  13598982 aatcgtgacacgatttcatcaacgtgtcacgattt-ctaggcagcgagcatggtttttcaaggtattcaatcgtgtcatgattttgggaaaatgtgacac 13598884  T
Q  557 gatttt 562  Q
    ||||||    
T  13598883 gatttt 13598878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 3156539 - 3156591
Alignment:
Q  510 ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||| | ||||||| ||||||||||||||||| | ||||||||||    
T  3156539 ttttgcagggtgccaaatcgtgacacgattttgggaaaacataacacgatttt 3156591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 3189027 - 3189074
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||| ||||||||||||||||||||||||||    
T  3189027 cagggcgtccaatcgtgacacaattttgggaaaacgtgacacgatttt 3189074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 3197844 - 3197891
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||| ||||||||||||||||||||||||||    
T  3197844 cagggcgtccaatcgtgacacaattttgggaaaacgtgacacgatttt 3197891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 3206662 - 3206709
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||| ||||||||||||||||||||||||||    
T  3206662 cagggcgtccaatcgtgacacaattttgggaaaacgtgacacgatttt 3206709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 19361008 - 19361059
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  19361008 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 19361059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 19365864 - 19365915
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  19365864 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 19365915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 20762348 - 20762395
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||||    
T  20762348 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttt 20762395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 10924893 - 10924947
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||  | ||||||| ||||||||||| |||| |||||||||||||    
T  10924893 tgttttgcagggtacccaatcgtgacacgattttggaaaaatgtgacacgatttt 10924947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 37879607 - 37879553
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||   ||||||| ||||||||||| |||| |||||||||||||    
T  37879607 tgttttgcagggtgctcaatcgtgacacgattttggaaaaatgtgacacgatttt 37879553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 3282221 - 3282184
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  3282221 aatcgtgtcacgattttgagaaaacgtgacacgatttt 3282184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 561
Target Start/End: Original strand, 9986895 - 9986931
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  9986895 aatcgtgacacgattttgggaaatcgtgacacgattt 9986931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 415 - 562
Target Start/End: Original strand, 4585738 - 4585885
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||    
T  4585738 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaattgtgacactatttagcaagtgtgtcacgattttctaggcagtgagcatgttttg 4585837  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| ||||||    
T  4585838 cagggtgtccaatcgtgacactattttgggaaaacgtgacaagatttt 4585885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 433 - 562
Target Start/End: Complemental strand, 47674517 - 47674387
Alignment:
Q  433 aatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtg 531  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  47674517 aatttgtgaagttgagaatgatgagaatcgtgacacgatttagcaagcatgtcacgattttccaggcagtgagcatggttttgcagggtgtccaatcgtg 47674418  T
Q  532 gcacgattttgggaaaacgtgacacgatttt 562  Q
     ||||||||||||||||||||||||||||||    
T  47674417 acacgattttgggaaaacgtgacacgatttt 47674387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 433 - 562
Target Start/End: Complemental strand, 47676710 - 47676580
Alignment:
Q  433 aatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtg 531  Q
    ||||| |||||||||||||||| |||||| ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  47676710 aatttatgaagttgagaatgatgagaatcatgacatgatttagcaagcgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtg 47676611  T
Q  532 gcacgattttgggaaaacgtgacacgatttt 562  Q
     ||||||||||||||||||||||||||||||    
T  47676610 acacgattttgggaaaacgtgacacgatttt 47676580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 415 - 562
Target Start/End: Complemental strand, 14070424 - 14070278
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| |  | || | |||||||||| |||||||||||||| |||     
T  14070424 ttgttgtgtatgtcttcaaatttgtgaagttgagaatggtt-gaatcgtgacacgattttggcatcgtggcacgattttcaaggcagtgagcatggtttt 14070326  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  14070325 cagggtgttcaatcgtgacacgattttgggaaaacgtgacacgatttt 14070278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 415 - 562
Target Start/End: Complemental strand, 14380452 - 14380306
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| |  | || | |||||||||| |||||||||||||| |||     
T  14380452 ttgttgtgtatgtcttcaaatttgtgaagttgagaatggtt-gaatcgtgacacgattttggcatcgtggcacgattttcaaggcagtgagcatggtttt 14380354  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  14380353 cagggtgttcaatcgtgacacgattttgggaaaacgtgacacgatttt 14380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 27347543 - 27347647
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagca-tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||| |||||     
T  27347543 aatcgtgacacgatttgctaagcgtgtcacgattttctaggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaac-tgacat 27347641  T
Q  557 gatttt 562  Q
    ||||||    
T  27347642 gatttt 27347647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 455 - 541
Target Start/End: Complemental strand, 34311371 - 34311285
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgatttt 541  Q
    ||||||||||||||||||| | || || ||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||    
T  34311371 aagaatcgtgacacgatttggcaaacgtgtcacgattttctaggcagtgagcatggtttgcagggtgtccaatcatgacacgatttt 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 32358575 - 32358498
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||||||| ||| |||||| || |||||||  ||||||||||||||||||||||| |||||    
T  32358575 cacgattttctaggcagtgagcatggttttcagggtatccaatcgtgatacgattttgggaaaacgtgacacaatttt 32358498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 2389694 - 2389798
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||| |||||  || || | ||||||||||||| ||||||||||| |||  |||||||| ||||||| |||||||||| ||||| ||||||||    
T  2389694 aatcgtgacacaatttatgaaccgtggcacgattttctagacagtgagcatggtttttagggtgtccaatcgtgacacgattttgagaaaatgtgacacg 2389793  T
Q  558 atttt 562  Q
    |||||    
T  2389794 atttt 2389798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 4539049 - 4538995
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  4539049 tgttttgaagggtgcctaatcgtgacacgattttgggaaaacgtgacacgatttt 4538995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 462 - 562
Target Start/End: Original strand, 18126268 - 18126368
Alignment:
Q  462 gtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||| || | || || |||| ||||||||||| |||||| ||| |||||||||||||| ||||||| ||||||||||| ||||||||| ||||||    
T  18126268 gtgacacgaattggcaaacgtgtcatgattttctaggtagtgagtatggttttgcagggtgtccaatcgtg-cacgattttggaaaaacgtgatacgatt 18126366  T
Q  561 tt 562  Q
    ||    
T  18126367 tt 18126368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 49092245 - 49092169
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||| || ||||||||||| |||||||||||   ||||||| |||||||||||||||| |||||||||||||    
T  49092245 cacgattttc-agacagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaatgtgacacgatttt 49092169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 23554716 - 23554763
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  23554716 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 23554763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 33331965 - 33332070
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    |||||||||| |||||  | | || ||||||||||| ||||||||||||||| ||||  ||||||   ||| ||| ||||||||||| ||||||||||||    
T  33331965 aatcgtgacatgatttcatcaacgtgtcacgattttttaggcagtgagcatggttttttagggtgctcaattgtgtcacgattttggaaaaacgtgacac 33332064  T
Q  557 gatttt 562  Q
    ||||||    
T  33332065 gatttt 33332070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 562
Target Start/End: Original strand, 43863878 - 43863985
Alignment:
Q  456 agaatcgtgacacgatttagtaagcgcgtcacgattttc-tag-gcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtga 553  Q
    |||||||||||||||||| | ||||| ||||| |||||  ||| ||   ||||||||||| | | ||||| ||||||| |||||||||||||||||||||    
T  43863878 agaatcgtgacacgatttggaaagcgtgtcaccattttggtagtgcccagagcatgttttcc-gagtgtccaatcgtgacacgattttgggaaaacgtga 43863976  T
Q  554 cacgatttt 562  Q
    |||||||||    
T  43863977 cacgatttt 43863985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 25767450 - 25767399
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| ||||||||||||||| ||||||||||||||    
T  25767450 tttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgatttt 25767399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 4796235 - 4796289
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||   ||||||| ||||||||||| ||||||||||||||||||    
T  4796235 tgttttgcagggtgctcaatcgtgacacgattttggaaaaacgtgacacgatttt 4796289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 6360628 - 6360574
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| | ||| ||| |||||||||||| |||||||||||||||||    
T  6360628 tgttttgcagggtgcccaattgtgacacgattttggggaaacgtgacacgatttt 6360574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 2647213 - 2647317
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    |||||| |||||||||  | | || |||| ||||||| |||||| ||||||| ||||  ||||||  |||||||| |||||||||||||||||||||||     
T  2647213 aatcgtaacacgatttcatcaacgtgtcaggattttc-aggcagcgagcatggtttttgagggtgcttaatcgtgtcacgattttgggaaaacgtgacat 2647311  T
Q  557 gatttt 562  Q
    ||||||    
T  2647312 gatttt 2647317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 24789522 - 24789571
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||| | |||||||||||||| |||||||| ||||||||||||    
T  24789522 tttgcagggtgccaaatcgtggcacgatcttgggaaatcgtgacacgatt 24789571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 79970 - 79868
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | |||||||||||||| ||||||||   || ||||||| ||||||||||| |||| |||||| |    
T  79970 aatcgtgacacgatttcattaacgtgtcacgatttcc-aggcagtgagcatggtttgcaggtgctc-aatcgtgtcacgattttggaaaaatgtgacaag 79873  T
Q  558 atttt 562  Q
    |||||    
T  79872 atttt 79868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 2479864 - 2479813
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| ||||||| |||||||||| |||| ||| ||||||||||    
T  2479864 tttgcagggtgtcaaatcgtgtcacgattttgtgaaatcgttacacgatttt 2479813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 4178451 - 4178498
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||||    
T  4178451 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttt 4178498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 19495646 - 19495693
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||||||||    
T  19495646 cagggtgtccaatcgtgacacaattttgggaaaacgtgccacgatttt 19495693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 21983771 - 21983720
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||| |||| ||||||| |||||||||||||||||||    
T  21983771 tttgcagggtgaccaatcgcggcatgattttgtgaaaacgtgacacgatttt 21983720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 48489100 - 48489154
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||  || |||| |||||||| |||||||||||||||| ||||    
T  48489100 tgttttgcagggtgttcaaccgtgacacgatttagggaaaacgtgacacggtttt 48489154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 48599994 - 48599940
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||   ||||||| ||||||| |||| |||||||||||||||||    
T  48599994 tgttttgcagggtgcacaatcgtgacacgattatggggaaacgtgacacgatttt 48599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 1532999 - 1533048
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||    
T  1532999 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatt 1533048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 21811834 - 21811882
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgat 559  Q
    |||||||||||   |||||||||||||| |||||||| |||||||||||    
T  21811834 tttgcagggtgcaaaatcgtggcacgatcttgggaaatcgtgacacgat 21811882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 415 - 562
Target Start/End: Complemental strand, 12746007 - 12745861
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||| |    
T  12746007 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagcaagcgtgacacgattttctaggcagtgagc-tgtttgg 12745909  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||    
T  12745908 cagggtgtccaatcgtgacatgattttgggaaaacgtgacacgatttt 12745861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 415 - 562
Target Start/End: Complemental strand, 9928052 - 9927905
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||  ||||||||||||||||||||| |||||||||    
T  9928052 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacaatttaacaagcgtatcacgattttctaggcagtgaacatgttttg 9927953  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||  ||||||| |||||||||||||||| |||||||||||||    
T  9927952 cagggtgttcaatcgtgacacgattttgggaaaatgtgacacgatttt 9927905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 416 - 562
Target Start/End: Complemental strand, 12740128 - 12739983
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgc 515  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||||| ||||||||    
T  12740128 tgttgtgtatgccttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagcaaacgtgtcacgattttctaggcactgagc-tgttttgc 12740030  T
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||| || || | ||||||||||||||||||| |||| |||||    
T  12740029 agggtgtccaaccgcgacacgattttgggaaaacgtaacacaatttt 12739983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 416 - 562
Target Start/End: Complemental strand, 12748334 - 12748189
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgc 515  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||||| ||||||||    
T  12748334 tgttgtgtatgccttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagcaaacgtgtcacgattttctaggcactgagc-tgttttgc 12748236  T
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||| || || | ||||||||||||||||||| |||| |||||    
T  12748235 agggtgtccaaccgcgacacgattttgggaaaacgtaacacaatttt 12748189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 415 - 562
Target Start/End: Original strand, 3754590 - 3754736
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||  ||||||||||| ||| || ||||| |||||||    
T  3754590 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgacaagaatcgtgacacgatttaacaagcatgtcacgattttttagacaatgagc-tgttttg 3754688  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||  ||| ||  |||||||||   |||| |||||||||||||    
T  3754689 cagggtgtacaattgtaacacgattttaaaaaaatgtgacacgatttt 3754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 562
Target Start/End: Original strand, 5429298 - 5429404
Alignment:
Q  457 gaatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgaca 555  Q
    ||||| ||||||||||| ||||||| ||||||||||| | | |  | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  5429298 gaatcatgacacgatttggtaagcgtgtcacgattttgcaatgttgagagcatgttttgcagggtgtctaatcgtgacacgattttgggaaaacgtgata 5429397  T
Q  556 cgatttt 562  Q
    |||||||    
T  5429398 cgatttt 5429404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 455 - 562
Target Start/End: Original strand, 54882438 - 54882546
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttcta-ggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtga 553  Q
    ||||| ||||||||||||| | || |  |||||||||||  | ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  54882438 aagaaacgtgacacgatttggcaatcatgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacgtga 54882537  T
Q  554 cacgatttt 562  Q
    |||||||||    
T  54882538 cacgatttt 54882546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 455 - 562
Target Start/End: Original strand, 26363664 - 26363771
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgac 554  Q
    ||||||||||||||||||| | || |  ||||||||||| |||||||||| |||  |||  |||||||| ||||||| ||||||||||||||||||||||    
T  26363664 aagaatcgtgacacgatttggcaaccatgtcacgattttttaggcagtgaacattgtttttagggtgtccaatcgtgacacgattttgggaaaacgtgac 26363763  T
Q  555 acgatttt 562  Q
    ||||||||    
T  26363764 acgatttt 26363771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 6655357 - 6655462
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  || ||| ||||||||||| | | || ||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  6655357 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacac 6655456  T
Q  557 gatttt 562  Q
    ||||||    
T  6655457 gatttt 6655462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 16628388 - 16628491
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | |  | |||||||||||| |||||||||||||| |||||||||||   ||||||| |||||||||||||||||||||||||    
T  16628388 aatcgtgacacgatttcatcaatgtgtcacgattttc-aggcagtgagcatgctttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacg 16628486  T
Q  558 atttt 562  Q
    |||||    
T  16628487 atttt 16628491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 3778130 - 3778026
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    |||||||||||||||   | | || |||||||||||| | |||| ||||||| |||||||||||   ||||||| |||||||||||||||||||||||||    
T  3778130 aatcgtgacacgattacatcaacgtgtcacgattttccaagcagcgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacg 3778031  T
Q  558 atttt 562  Q
    |||||    
T  3778030 atttt 3778026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 562
Target Start/End: Complemental strand, 34570983 - 34570858
Alignment:
Q  428 cttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaa 526  Q
    ||||||||||||||||||| | ||||  |||||||||||||||||||| ||||| ||||||||||| | | || |  ||||||||||||          |    
T  34570983 cttcaaatttgtgaagttggggatgaacagaatcgtgacacgatttagcaagcgtgtcacgattttccaacgccgaaagcatgttttgc----------a 34570894  T
Q  527 tcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34570893 tcgtgacacgattttgggaaaacgtgacacgatttt 34570858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 6742981 - 6743035
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  6742981 tgtttttcagggtgcctaatcgtggcacgtttttgggaaaacgtgacacgatttt 6743035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 52095852 - 52095805
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  52095852 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 52095805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 3909760 - 3909821
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||| |||||| ||||||| ||||||||| ||||||| |||||| |||||    
T  3909760 gtgagcatgttttgcacggtgtcaaatcgtgacacgatttttggaaaacatgacactatttt 3909821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 29254141 - 29254182
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataa 456  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  29254141 ttgttgtgtatgtcttcaaacttgtgaagttgagaatgataa 29254182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 36314746 - 36314850
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||||| |||||| |||||| ||||  |||| ||   ||||||| ||||||||||||||||||||||||    
T  36314746 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatagtttctcaggatgctcaatcgtgtcacgattttgggaaaacgtgacac 36314844  T
Q  557 gatttt 562  Q
    ||||||    
T  36314845 gatttt 36314850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 36328955 - 36329059
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||||| |||||| |||||| ||||  |||| ||   ||||||| ||||||||||||||||||||||||    
T  36328955 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatagtttctcaggatgctcaatcgtgtcacgattttgggaaaacgtgacac 36329053  T
Q  557 gatttt 562  Q
    ||||||    
T  36329054 gatttt 36329059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 40630430 - 40630490
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||  | ||||| ||||||| ||||||||||||||||||||||||||||||    
T  40630430 gtgagcatgttttgt-gagtgtccaatcgtgtcacgattttgggaaaacgtgacacgatttt 40630490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 16622809 - 16622912
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||||| ||| |||||||||| ||||||  |||   ||| ||| ||| |||||||||||||||||||||    
T  16622809 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggtagtgagcatggtttgcattgtgctcaattgtgtcacaattttgggaaaacgtgacacg 16622907  T
Q  558 atttt 562  Q
    |||||    
T  16622908 atttt 16622912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 5148206 - 5148155
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | |||||||||||||||||| |||||| ||||||||||||    
T  5148206 tttgcagggtgaccaatcgtggcacgattttgtgaaaacttgacacgatttt 5148155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 5268752 - 5268819
Alignment:
Q  496 aggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| ||||||| |||| |||||||   ||||||| ||||||||||||||||||||||||||||||    
T  5268752 aggcagcgagcatggtttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatttt 5268819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 507 - 562
Target Start/End: Complemental strand, 5370575 - 5370520
Alignment:
Q  507 atgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||| ||| ||||||| ||||||||||||||| ||||||||||||||    
T  5370575 atgtttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttt 5370520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 13992783 - 13992732
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| ||||||||||||||| ||||||||||||||    
T  13992783 tttgcagggtgccaaatcgtgacacgattttgggaaatcgtgacacgatttt 13992732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 2209172 - 2209226
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||| ||| | ||||||| |||||||||||| |||||||||||||||||    
T  2209172 tgttttgcagagtgcccaatcgtgacacgattttggggaaacgtgacacgatttt 2209226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 25861548 - 25861653
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgt-tttgcagggtgtctaatcgtggcacgattttggg-aaaacgtgaca 555  Q
    ||||||||||||||||  | | || |||||||||| | ||||||||||||||  ||| |||||||   ||||||| |||||||||||| |||||||||||    
T  25861548 aatcgtgacacgatttcatcaacgtgtcacgatttcc-aggcagtgagcatggcttttcagggtgctcaatcgtgtcacgattttgggaaaaacgtgaca 25861646  T
Q  556 cgatttt 562  Q
    |||||||    
T  25861647 cgatttt 25861653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 26176122 - 26176068
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| | || |||| ||| ||||||||||||||||||||||||||    
T  26176122 tgttttgcagggtgcccaaccgtgacacaattttgggaaaacgtgacacgatttt 26176068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 8689079 - 8689116
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8689079 aatcgtgacacgattttgggaaaacgtgacacgatttt 8689116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 27417650 - 27417613
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27417650 aatcgtgacacgattttgggaaaacgtgacacgatttt 27417613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 562
Target Start/End: Complemental strand, 54867758 - 54867656
Alignment:
Q  460 tcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacga 558  Q
    ||||||||||||||  | | || ||||||||||||  ||||| ||||||| |||| |||| ||   ||||||| ||| ||||||||||||||||||||||    
T  54867758 tcgtgacacgatttcatcaacgtgtcacgattttcg-ggcagcgagcatggtttttcaggatgctcaatcgtgtcacaattttgggaaaacgtgacacga 54867660  T
Q  559 tttt 562  Q
    ||||    
T  54867659 tttt 54867656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 56179116 - 56179069
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||||||||||||||||||||||| ||||||    
T  56179116 cagggcgtccaatcgtgacacgattttgggaaaacgtgacatgatttt 56179069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 561
Target Start/End: Complemental strand, 10047947 - 10047843
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg--ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgaca 555  Q
    ||||||||||||||||  | | || ||| |||||| | |||||| |||||||  |||| |||||||   || |||| |||||||||||||||||||||||    
T  10047947 aatcgtgacacgatttcatcaacgtgtcgcgatttcc-aggcagcgagcatggttttttcagggtgctcaaccgtgtcacgattttgggaaaacgtgaca 10047849  T
Q  556 cgattt 561  Q
    ||||||    
T  10047848 cgattt 10047843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 31495806 - 31495756
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    ||||||||||| | ||||||| ||||||| ||||||| |||||||||||||    
T  31495806 tttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgacacgattt 31495756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 37740296 - 37740350
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||| | ||||||  ||||||||||||||||||||||| ||||||    
T  37740296 tgttttgtagggtgcccaatcgtaacacgattttgggaaaacgtgacatgatttt 37740350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 46570242 - 46570188
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||    
T  46570242 tgttctgcagggtgcccaatcgtgacaagattttgggaaaacgtgacacaatttt 46570188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 5143775 - 5143738
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  5143775 aatcgtggcacgattttgtgaaaatgtgacacgatttt 5143738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 5396273 - 5396310
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  5396273 aatcgtgtcacgattttggaaaaacgtgacacgatttt 5396310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 41639034 - 41639071
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  41639034 aatcgtgacacgattttggaaaaacgtgacacgatttt 41639071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 562
Target Start/End: Complemental strand, 50674568 - 50674508
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||  | ||||| |||||||  |||||||||||||||||||||| ||||||    
T  50674568 gtgagcatgttttgt-gagtgtccaatcgtgttacgattttgggaaaacgtgacatgatttt 50674508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 18377920 - 18377816
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    |||||||||||||||  | ||||| ||||| ||||||| |||||  |||||||||| | ||||||  ||| ||| |||||||| | | || | |||||||    
T  18377920 aatcgtgacacgattatgcaagcgtgtcacaattttctcggcaggaagcatgtttttctgggtgttcaattgtgacacgatttcgagcaatcatgacacg 18377821  T
Q  558 atttt 562  Q
    |||||    
T  18377820 atttt 18377816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 38151953 - 38152056
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || ||||| |||| | |||||||||| | | |||||||||||   ||||||| ||| | ||||||||||||||||||     
T  38151953 aatcgtgacacgatttcatcaacgtgtcacaatttcc-aggcagtgagtacggtttgcagggtgctcaatcgtgtcacaaatttgggaaaacgtgacaca 38152051  T
Q  558 atttt 562  Q
    |||||    
T  38152052 atttt 38152056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 416 - 562
Target Start/End: Original strand, 32636402 - 32636547
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgc 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| | |||||||||||||| ||||||||||    
T  32636402 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttggcaagcgtgtcacca-tttctaggcagtgaacatgttttgc 32636500  T
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    | |||||| ||||||| |||||||||||||||||||| |||||||||    
T  32636501 aaggtgtccaatcgtgacacgattttgggaaaacgtggcacgatttt 32636547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 454 - 562
Target Start/End: Complemental strand, 42428971 - 42428862
Alignment:
Q  454 taagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtg 552  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  42428971 taaggatcgtgacacgatttagtaagcgtgtcacgattttctaggaagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtg 42428872  T
Q  553 acacgatttt 562  Q
    ||||||||||    
T  42428871 acacgatttt 42428862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 416 - 562
Target Start/End: Original strand, 37438724 - 37438869
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgc 515  Q
    |||||| |||||||||||||||||||||||||||||| |  ||||||||||| ||||| |  | || |  ||||||||| |||||||||||||| ||| |    
T  37438724 tgttgtatatgtcttcaaatttgtgaagttgagaatgttg-gaatcgtgacatgattttggcatcgtggtacgattttcaaggcagtgagcatggttttc 37438822  T
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    || ||||| ||||||| || |||||||||||||||||||||||||||    
T  37438823 agagtgtccaatcgtgacatgattttgggaaaacgtgacacgatttt 37438869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 454 - 562
Target Start/End: Complemental strand, 42426788 - 42426679
Alignment:
Q  454 taagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtg 552  Q
    |||| ||||| ||||||||||| ||||| |||| |||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  42426788 taaggatcgtcacacgatttagcaagcgtgtcatgattttctgggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtg 42426689  T
Q  553 acacgatttt 562  Q
    |||| |||||    
T  42426688 acacaatttt 42426679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 431 - 561
Target Start/End: Complemental strand, 16651198 - 16651067
Alignment:
Q  431 caaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagc-atgttttgcagggtgtctaatcg 529  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| || || | ||||||||   ||||||||||| ||||||| ||||||    ||||     
T  16651198 caaatttgtgaagttgggaatgataagaatcgtgtcacgatttagcaaacgtgacacgatttctgaggcagtgagcaatgtttttcagggtactcaatca 16651099  T
Q  530 tggcacgattttgggaaaacgtgacacgattt 561  Q
    || |||||||||||||||||||||||||||||    
T  16651098 tgacacgattttgggaaaacgtgacacgattt 16651067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 485 - 562
Target Start/End: Original strand, 212991 - 213068
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| |||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  212991 cacgattttctaggtagtgagcatggtttgcagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 456 - 562
Target Start/End: Original strand, 40146667 - 40146773
Alignment:
Q  456 agaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgaca 555  Q
    |||||||||||||||| ||  || || | |||||||||||||||||||| |||| ||| ||||||||| ||||||| |||||||||||||||| |||||     
T  40146667 agaatcgtgacacgatctatgaaccgtggcacgattttctaggcagtgaacatggttttcagggtgtccaatcgtgacacgattttgggaaaatgtgact 40146766  T
Q  556 cgatttt 562  Q
    |||||||    
T  40146767 cgatttt 40146773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 11916487 - 11916591
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||| ||||  | | || |||||||||||| ||||||||||  || |||||||||||   ||||||| |||||||||||||||||||||||||    
T  11916487 aatcgtgacacaatttcatcaacgtgtcacgattttccaggcagtgagtgtggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacg 11916586  T
Q  558 atttt 562  Q
    |||||    
T  11916587 atttt 11916591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 562
Target Start/End: Original strand, 5057478 - 5057555
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||| |||||||  ||| ||||||||| ||||||| ||||||||||| |||||||||||| |||||    
T  5057478 cacgattttctaggcaatgagcatagttttcagggtgtccaatcgtgacacgattttggtaaaacgtgacacaatttt 5057555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 416 - 561
Target Start/End: Complemental strand, 28751174 - 28751027
Alignment:
Q  416 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacg--atttagtaagcgcgtcacgattttct-aggcagtgagcatgttt 512  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||  |||| | || ||  |||||||||  | | |  | |||  |||||    
T  28751174 tgttgtgtatgtcttcaaatttgtaaagttgagaatgtaaagaatcgtgacacgatatttggcaatcgtttcacgatttcgtaatgtcgagag-ttgttt 28751076  T
Q  513 tgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| ||||    
T  28751075 tgcagggtgttcaatcgtgacacgattttgggaaaacgtgacacaattt 28751027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 12083693 - 12083797
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | |||||||||||||| ||| |||||||   ||| ||| |||  ||||||||||||||||||||    
T  12083693 aatcgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggtttacagggtgctcaattgtgtcacagttttgggaaaacgtgacacg 12083792  T
Q  558 atttt 562  Q
    |||||    
T  12083793 atttt 12083797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 14520811 - 14520707
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||||| |||||| ||||||| |||  |||||||   ||||||| || |||||||||||||||||||||    
T  14520811 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcagggtgctcaatcgtgtcatgattttgggaaaacgtgacac 14520713  T
Q  557 gatttt 562  Q
    ||||||    
T  14520712 gatttt 14520707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 9352903 - 9352954
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| ||||||||||||||| || |||| ||||||||||||||    
T  9352903 tttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgatttt 9352954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 549
Target Start/End: Original strand, 13487820 - 13487916
Alignment:
Q  454 taagaatcgtgacacgatttagtaagcgcgtcacgattttc-taggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaac 549  Q
    |||| |||||||||||||||  | | || |||||||||||| | |||| ||||||| |||| |||||||   ||||||| |||||||||||||||||    
T  13487820 taaggatcgtgacacgatttcatcaacgtgtcacgattttccttggcaatgagcatatttttcagggtgctcaatcgtgacacgattttgggaaaac 13487916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 24136388 - 24136337
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  24136388 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 24136337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 562
Target Start/End: Complemental strand, 30683395 - 30683352
Alignment:
Q  519 gtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||||    
T  30683395 gtgtccaatcgtgacacaattttgggaaaacgtgacacgatttt 30683352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 9789713 - 9789663
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    ||||||||||| | ||||||| ||||||| ||||||| |||||||||||||    
T  9789713 tttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgacacgattt 9789663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 11181412 - 11181450
Alignment:
Q  503 gagcatgttttgcagggtgtctaatcgtggcacgatttt 541  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  11181412 gagcatgttttgcagggtgtccaatcgtgacacgatttt 11181450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Complemental strand, 18442137 - 18442087
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    ||||||||||| | ||||||| ||||||| ||||||| |||||||||||||    
T  18442137 tttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgacacgattt 18442087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 30683306 - 30683269
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  30683306 aatcgtgacacaattttgggaaaacgtgacacgatttt 30683269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 443
Target Start/End: Original strand, 19634111 - 19634139
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaag 443  Q
    |||||||||||||||||||||||||||||    
T  19634111 ttgttgtgtatgtcttcaaatttgtgaag 19634139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 28807171 - 28807219
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgat 559  Q
    |||||||||||   |||||||||||||| |||||||| |||||||||||    
T  28807171 tttgcagggtgcaaaatcgtggcacgatcttgggaaatcgtgacacgat 28807219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 433 - 562
Target Start/End: Original strand, 29812657 - 29812787
Alignment:
Q  433 aatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtg 531  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  29812657 aatttgtgaagttaagaatgatgagaatcgtgacacgatttagcaagtgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtg 29812756  T
Q  532 gcacgattttgggaaaacgtgacacgatttt 562  Q
     ||||||||||||||||||||||||||||||    
T  29812757 acacgattttgggaaaacgtgacacgatttt 29812787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 435 - 551
Target Start/End: Original strand, 29810464 - 29810581
Alignment:
Q  435 tttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtggc 533  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||| ||||||| |    
T  29810464 tttgtgaagttgagaatgatgagaatcgtgacatgatttagcaagcgtgtcacaattttctaggcattgagcatggttttgcagggtgtccaatcgtgac 29810563  T
Q  534 acgattttgggaaaacgt 551  Q
    |||||||| | |||||||    
T  29810564 acgattttagaaaaacgt 29810581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 51398445 - 51398550
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    |||||| |||||||||  |||||| |||||||||||||||| |||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  51398445 aatcgtaacacgatttgctaagcgtgtcacgattttctaggtagtgagcatggttttgcagggtgtccaattgtgacacgattttgggaaaacgtgacac 51398544  T
Q  557 gatttt 562  Q
     |||||    
T  51398545 aatttt 51398550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 455 - 562
Target Start/End: Complemental strand, 31340812 - 31340704
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttggg-aaaacgtga 553  Q
    ||||||||||||||||||| | || || ||||||||||||||||||||||||||| ||| ||||||||| ||||||| || ||||||||| ||||| |||    
T  31340812 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatggttttcagggtgtccaatcgtgacatgattttgggaaaaacatga 31340713  T
Q  554 cacgatttt 562  Q
    |||||||||    
T  31340712 cacgatttt 31340704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 46173161 - 46173238
Alignment:
Q  483 gtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    |||||||||| | |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  46173161 gtcacgatttccaaggcagtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacatgacacgatt 46173238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 21711783 - 21711679
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||||| |||||||||||||| ||| |||||||   ||||||| ||||||||||||||||||||||||     
T  21711783 aatcgtgacacgatttcttcaacgtgtcacgattttccaggcagtgagcatggttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacaca 21711684  T
Q  558 atttt 562  Q
    |||||    
T  21711683 atttt 21711679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 457 - 562
Target Start/End: Original strand, 36018262 - 36018368
Alignment:
Q  457 gaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgaca 555  Q
    ||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||  | |||||   ||||||| |||||||||||||||||||||||    
T  36018262 gaatcgtgacacgattacgcaagcgtgtcacgattttctaggcagtgagcatattttttctgggtgctcaatcgtgacacgattttgggaaaacgtgaca 36018361  T
Q  556 cgatttt 562  Q
    | |||||    
T  36018362 caatttt 36018368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 562
Target Start/End: Original strand, 4569352 - 4569457
Alignment:
Q  457 gaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||| |  | || | ||| ||||||||||||||| ||||| |||  |||||||| ||||||| || |||||||||||||||||||||    
T  4569352 gaatcgtgacacgattttggcatcgtggcacaattttctaggcagtgcgcatggtttttagggtgtccaatcgtgacatgattttgggaaaacgtgacac 4569451  T
Q  557 gatttt 562  Q
    ||||||    
T  4569452 gatttt 4569457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 49200218 - 49200113
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||   | ||| ||||||||||| | | || ||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||    
T  49200218 aatcgtgacacgattttacaggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacac 49200119  T
Q  557 gatttt 562  Q
    ||||||    
T  49200118 gatttt 49200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 35926072 - 35925968
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | |||||||||||||| |||||||||||   ||||||| ||||| |||| ||||||||||||||    
T  35926072 aatcgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggtttgcagggtgctcaatcgtgtcacgagtttgagaaaacgtgacacg 35925973  T
Q  558 atttt 562  Q
    |||||    
T  35925972 atttt 35925968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 36029674 - 36029571
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||||| |||||| || |||| |||||||||||  |||||||| ||||||||||| |||||||||||||    
T  36029674 aatcgtgacacgattttatcaacgtgtcacgattttc-aggcagcgaacatggtttgcagggtgcttaatcgtgtcacgattttggaaaaacgtgacacg 36029576  T
Q  558 atttt 562  Q
    |||||    
T  36029575 atttt 36029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 40735048 - 40735151
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | || ||||||||||| |||||||||||   ||||||| |||||||||||||||||||||||||    
T  40735048 aatcgtgacacgatttcatcaacgtgtcacgatttccaag-cagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacg 40735146  T
Q  558 atttt 562  Q
    |||||    
T  40735147 atttt 40735151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 496 - 562
Target Start/End: Complemental strand, 6096328 - 6096262
Alignment:
Q  496 aggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| |||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  6096328 aggcactgagcatggtttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacgatttt 6096262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 27027261 - 27027184
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||| | |||||||||||||| ||||||| |||   ||||||| ||||||||||||||||||||||||||||||    
T  27027261 cacgatttcccaggcagtgagcatggtttgcagagtgctcaatcgtgtcacgattttgggaaaacgtgacacgatttt 27027184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 501 - 562
Target Start/End: Complemental strand, 44331952 - 44331891
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  44331952 gtgagtatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgatttt 44331891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 27038623 - 27038519
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || | |||||||| | |||||||||||||| |||||||||||   |||| || |||||||||||||||| ||||||||    
T  27038623 aatcgtgacacgatttcatcaacgtgacacgatttcccaggcagtgagcatggtttgcagggtgctcaatcatgtcacgattttgggaaaatgtgacacg 27038524  T
Q  558 atttt 562  Q
    |||||    
T  27038523 atttt 27038519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 30709301 - 30709404
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || ||||| |||||| ||| |||||||||| ||||||||||||  ||||||| |||||||||| |||||||||||||     
T  30709301 aatcgtgacacgatttcatcaacgtgtcacaattttc-aggtagtgagcatggtttgcagggtgttcaatcgtgtcacgattttgagaaaacgtgacaca 30709399  T
Q  558 atttt 562  Q
    |||||    
T  30709400 atttt 30709404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 40734156 - 40734220
Alignment:
Q  498 gcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||    
T  40734156 gcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatttt 40734220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 8370036 - 8370098
Alignment:
Q  500 agtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||    
T  8370036 agtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatttt 8370098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 5237005 - 5236901
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  |||||| ||||||||||  ||| || | ||||||||||| | | ||||| ||||||| ||| ||||||||||||||||||||    
T  5237005 aatcgtgacacgatttcataagcgtgtcacgatttggctatgccgagagcatgtttt-ctgagtgtccaatcgtgacacaattttgggaaaacgtgacac 5236907  T
Q  557 gatttt 562  Q
    ||||||    
T  5236906 gatttt 5236901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 501 - 562
Target Start/End: Complemental strand, 16264887 - 16264826
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||    
T  16264887 gtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatttt 16264826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 562
Target Start/End: Original strand, 54593133 - 54593210
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||||||| ||| || ||| |  ||||||| | | ||||||||||||||||||||||||||    
T  54593133 cacgattttctaggcagtgagcatggttttcatggtattcaatcgtgactcaattttgggaaaacgtgacacgatttt 54593210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 55302703 - 55302627
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||||||  ||| ||||||||  ||||||| ||||| ||||||||||||||| ||||||||    
T  55302703 cacgattttctaggcagtgagcattgttttcagggtgttcaatcgtgacacga-tttgggaaaacgtgatacgatttt 55302627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 34490683 - 34490738
Alignment:
Q  507 atgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||    
T  34490683 atgttttgcagggtatccaatcgtgacacgattttggaaaaacgtgacacgatttt 34490738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 47923445 - 47923511
Alignment:
Q  496 aggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| |||||||||||   ||||||| |||  |||||||||||||||||||||||||    
T  47923445 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacatttttgggaaaacgtgacacgatttt 47923511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 39032060 - 39032164
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||||| |||||| ||||||| |||  |||||||   ||||||| |||||||||||||||| |||||||    
T  39032060 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcagggtgctcaatcgtgtcacgattttgggaaaatgtgacac 39032158  T
Q  557 gatttt 562  Q
    ||||||    
T  39032159 gatttt 39032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 44331232 - 44331293
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||||||||| ||||||  ||||||| |||||||||||||||| |||||||||||||    
T  44331232 gtgagtatgttttgctgggtgttcaatcgtgacacgattttgggaaaaagtgacacgatttt 44331293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 562
Target Start/End: Original strand, 1735835 - 1735913
Alignment:
Q  483 gtcacgattttctaggcagtgagcatgt-tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||| ||||||||||||||  ||| |||||||   ||||||| ||||||||||||||||||||||||||||||    
T  1735835 gtcacgattttc-aggcagtgagcatggcttttcagggtgctcaatcgtg-cacgattttgggaaaacgtgacacgatttt 1735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 7764128 - 7764175
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  7764128 cagggcgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 7764175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 503 - 562
Target Start/End: Complemental strand, 23410833 - 23410774
Alignment:
Q  503 gagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||| ||||||| ||| ||||||| |||||||| ||| |||||    
T  23410833 gagcatgttttgcagggtgtccaatcgtgacacaattttggaaaaacgtgtcacaatttt 23410774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 40592354 - 40592391
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  40592354 aatcgtgtcacgattttgggaaaacgtgacacgatttt 40592391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 562
Target Start/End: Complemental strand, 8127186 - 8127107
Alignment:
Q  484 tcacgattttctaggcagtgagcatgtt-ttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||| |||||||||||||||   || |||||||   ||||||| |||||||||||||||  |||||||||||||    
T  8127186 tcacgattttttaggcagtgagcatgggctttcagggtgctcaatcgtgtcacgattttgggaaagtgtgacacgatttt 8127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 37726203 - 37726152
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| ||||||| |||||||||| | || ||||||||||||||    
T  37726203 tttgcagggtgtcaaatcgtgacacgattttgtggaatcgtgacacgatttt 37726152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 2671160 - 2671210
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    |||||||| || | |||||||||||||| |||||||| |||||||||||||    
T  2671160 tttgcaggatgccaaatcgtggcacgatcttgggaaatcgtgacacgattt 2671210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 1306508 - 1306459
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||    
T  1306508 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatt 1306459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 3393293 - 3393330
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  3393293 aatcgtgacacgattttgggaaatcgtgacacgatttt 3393330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 5258626 - 5258589
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  5258626 aatcgtgacacgattttgggaaatcgtgacacgatttt 5258589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 43404432 - 43404395
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43404432 aatcgtgacacgattttggggaaacgtgacacgatttt 43404395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 541
Target Start/End: Original strand, 24694735 - 24694775
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgatttt 541  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  24694735 gtgagcatgttttgcagggtgtccaatcgtatcacgatttt 24694775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 433 - 555
Target Start/End: Original strand, 33351765 - 33351888
Alignment:
Q  433 aatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcat-gttttgcagggtgtctaatcgtg 531  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| ||||||||||||||| |||||||    
T  33351765 aatttgtgaagttaagaatgatgagaatcgtgacacgatttagcaagcgtgtcacgattttttaggcagtgaacatggttttgcagggtgtccaatcgtg 33351864  T
Q  532 gcacgattttgggaaaacgtgaca 555  Q
     ||||||||||||||||| |||||    
T  33351865 acacgattttgggaaaacatgaca 33351888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 562
Target Start/End: Original strand, 15212430 - 15212510
Alignment:
Q  483 gtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  15212430 gtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 15212510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 485 - 562
Target Start/End: Original strand, 22975963 - 22976040
Alignment:
Q  485 cacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||||| ||||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  22975963 cacgattttttaggcagtgggcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 22976040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 42435758 - 42435653
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||| ||||  || ||| ||||||||||| | | || ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  42435758 aatcgtgacacaatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacac 42435659  T
Q  557 gatttt 562  Q
    ||||||    
T  42435658 gatttt 42435653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 30143005 - 30143066
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||    
T  30143005 gtgagcatgttttgcagggtgtccaatcgtgacacgattttgggaaaatgtgacacgatttt 30143066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 43036086 - 43036147
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  43036086 gtgagcatgttttgcagggtgtccaatcgtgacacgattttggaaaaacgtgacacgatttt 43036147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 11383440 - 11383512
Alignment:
Q  490 ttttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||| ||||||||||| |||  |||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  11383440 ttttctagacagtgagcatggtttttagggtgtccaattgtgacacgattttgggaaaacgtgacacgatttt 11383512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 562
Target Start/End: Complemental strand, 4743783 - 4743638
Alignment:
Q  418 ttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagt-aagcgcgtcacgatttt-ctaggcagtgagcatgttttgc 515  Q
    |||| |||| ||||||||||||||||||| |||   |  |||||||||||||||| ||| ||||  ||||| ||||  | | || ||||||||||||||     
T  4743783 ttgtttatgccttcaaatttgtgaagttgggaaaacttggaatcgtgacacgatt-agtgaagcatgtcacaatttcgcaatgccgtgagcatgttttga 4743685  T
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||| ||||||| |||||||||| | |||||||||||||||||    
T  4743684 agggtgtccaatcgtgacacgattttgaggaaacgtgacacgatttt 4743638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 5701994 - 5702099
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||  |||||||||| | ||||||||| ||||||||||||   ||||||| ||||||||||| ||||||||||||    
T  5701994 aatcgtgacacgatttcatcaacgtgtcttgattttctagacggtgagcatggttttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacac 5702093  T
Q  557 gatttt 562  Q
    ||||||    
T  5702094 gatttt 5702099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 4733495 - 4733549
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  4733495 tgttttccagggtgttcaatcgtgacacgattttgggaaaacgtgacacgatttt 4733549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 40221210 - 40221270
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||  | ||||| ||||||| ||||||||||||||||||||||||||||||    
T  40221210 gtgagcatgttttgt-gagtgtccaatcgtgtcacgattttgggaaaacgtgacacgatttt 40221270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 27810970 - 27811022
Alignment:
Q  510 ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| ||||||| |||||||||| ||||| |||||||||||||    
T  27810970 ttttgcagggtgtccaatcgtgacacgattttgagaaaatgtgacacgatttt 27811022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 519 - 562
Target Start/End: Complemental strand, 12703126 - 12703083
Alignment:
Q  519 gtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  12703126 gtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 12703083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 4731328 - 4731382
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| ||||| ||||||    
T  4731328 tgttttacagggtgtccaatcgtgacacgattttgggaaaacatgacatgatttt 4731382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 501 - 562
Target Start/End: Original strand, 10014822 - 10014883
Alignment:
Q  501 gtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| |||||| || ||||||| |||||||||||| || | ||||||||||||    
T  10014822 gtgagcatgtttttcagggtttccaatcgtgacacgattttgggcaatcatgacacgatttt 10014883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 562
Target Start/End: Original strand, 19175273 - 19175352
Alignment:
Q  483 gtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||| |||||| ||||||| |||  |||||||   ||||||| ||||||||||||||||||||||| ||||||    
T  19175273 gtcacgattttc-aggcagggagcatggtttctcagggtgctcaatcgtgtcacgattttgggaaaacgtgacatgatttt 19175352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 1261510 - 1261561
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  1261510 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 1261561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 1746710 - 1746663
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||||    
T  1746710 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttt 1746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 7412856 - 7412805
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| |||||||| || |||||| |||| ||||||||||||||    
T  7412856 tttgcagggtgtcaaatcgtggtacaattttgtgaaatcgtgacacgatttt 7412805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 34254820 - 34254773
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| |||||||| || ||||||||||||||| ||||||||||||||    
T  34254820 cagggcgtctaatcatgacacgattttgggaaatcgtgacacgatttt 34254773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 34256996 - 34256949
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||||    
T  34256996 cagggcgtccaatcgtgacacgattttgggaaatcgtgacacgatttt 34256949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 2627414 - 2627464
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    |||||| |||| | ||||||| ||||||||||||||| |||||||||||||    
T  2627414 tttgcatggtgccaaatcgtgacacgattttgggaaatcgtgacacgattt 2627464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 509
Target Start/End: Complemental strand, 3051684 - 3051631
Alignment:
Q  456 agaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg 509  Q
    |||||||||||| ||||| ||| ||| ||||||||||||||| | |||||||||    
T  3051684 agaatcgtgacatgatttggtaggcgtgtcacgattttctagaccgtgagcatg 3051631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 554
Target Start/End: Complemental strand, 4456590 - 4456494
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgac 554  Q
    ||||||||||||||||  | | || |||||||||||| |||||| ||||||| |||  |||||||   ||||||| ||||| ||||||||||||||||    
T  4456590 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcagggtgctcaatcgtgtcacgaatttgggaaaacgtgac 4456494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 561
Target Start/End: Original strand, 4759643 - 4759679
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    |||||||||||||| |||||||| |||||||||||||    
T  4759643 aatcgtggcacgatcttgggaaatcgtgacacgattt 4759679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 415 - 562
Target Start/End: Original strand, 17863770 - 17863916
Alignment:
Q  415 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg 514  Q
    ||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||| |  | ||   |||||||||| |||||||||||||| |||     
T  17863770 ttgttgtgtatgtcttcaactttgtgaagttgagaatgttg-gaatcgtgacacgattttggcatcgtcgcacgattttcaaggcagtgagcatggtttt 17863868  T
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  17863869 cagggtgtccaatcgtgacataattttgggaaaacgtgacacgatttt 17863916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 455 - 562
Target Start/End: Original strand, 45726423 - 45726530
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgac 554  Q
    ||||| ||||||||||||| | || || ||||||||||||||||||||||||||| ||| ||||||||| ||| ||| |||||||||||| ||| |||||    
T  45726423 aagaaacgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgattttcagggtgtccaattgtgacacgattttgggcaaatgtgac 45726522  T
Q  555 acgatttt 562  Q
    ||||||||    
T  45726523 acgatttt 45726530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 39284516 - 39284621
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgtttt-gcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||| || | || || ||||||||||||||||||||||||||| ||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  39284516 aatcgtgacacgaattggcaaacgtgtcacgattttctaggcagtgagcatggtttcgcagggtgtcctatcgtgacacgattttgggaaaacgtgacac 39284615  T
Q  557 gatttt 562  Q
     |||||    
T  39284616 aatttt 39284621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 496 - 562
Target Start/End: Original strand, 33528177 - 33528243
Alignment:
Q  496 aggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||    
T  33528177 aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgatttt 33528243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 2837341 - 2837288
Alignment:
Q  509 gttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  2837341 gttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 2837288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 23077987 - 23078091
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | ||||||||||||||  ||| ||||||   ||| ||| |||||||||||||||||||||||||    
T  23077987 aatcgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggattgtagggtgctcaattgtgtcacgattttgggaaaacgtgacacg 23078086  T
Q  558 atttt 562  Q
    |||||    
T  23078087 atttt 23078091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 503 - 562
Target Start/End: Complemental strand, 36318513 - 36318453
Alignment:
Q  503 gagcatgttttgcagggtgtctaatcgtggcacga-ttttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||    
T  36318513 gagcatgttttgcagggtgtccaatcgtgacacgatttttggggaaacgtgacacgatttt 36318453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 29867556 - 29867603
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  29867556 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 29867603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 34389375 - 34389328
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  34389375 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 34389328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 560
Target Start/End: Complemental strand, 35447630 - 35447547
Alignment:
Q  477 aagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||| |||| |||||||||||||||||||||  ||| ||||||||  ||| ||  |||||||||||||||| |||||||||||    
T  35447630 aagcgtgtcatgattttctaggcagtgagcattgttttcagggtgttcaattgtaacacgattttgggaaaatgtgacacgatt 35447547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 8389666 - 8389767
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||| ||||| | |||||||||| ||| ||||||||||||    ||||| |||||||||||||||||||||||||    
T  8389666 aatcgtgacacgatttcatcaacgtgtcaagatttcc-aggcagtgagtatgatttgcagggtgttc--tcgtgtcacgattttgggaaaacgtgacacg 8389762  T
Q  558 atttt 562  Q
    |||||    
T  8389763 atttt 8389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 10706768 - 10706872
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttg-cagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||||| |||||| ||||||| |||  |||||||   ||| ||| ||||||||||||||||||||||||    
T  10706768 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcagggtgctcaattgtgtcacgattttgggaaaacgtgacac 10706866  T
Q  557 gatttt 562  Q
    ||||||    
T  10706867 gatttt 10706872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 562
Target Start/End: Original strand, 14698556 - 14698629
Alignment:
Q  489 attttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||| ||| | || |||  | ||||  ||||||||||||||||||||||||||||||    
T  14698556 attttctaggcagtgagcatgattttctggatgttcattcgtatcacgattttgggaaaacgtgacacgatttt 14698629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 6595486 - 6595439
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  6595486 cagggtgtccaatcgtgacacaattttgggaaaacgtgacacgatttt 6595439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 562
Target Start/End: Complemental strand, 13569879 - 13569808
Alignment:
Q  491 tttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||| |||||||||||||| |||||||||||   ||||||| ||  ||||||| ||||||||||||||||||    
T  13569879 tttccaggcagtgagcatggtttgcagggtgctcaatcgtgtcataattttggaaaaacgtgacacgatttt 13569808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 28258746 - 28258797
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| ||||||||||| |||||| |||| ||||||||||||||    
T  28258746 tttgcagggtgtcaaatcgtggcacaattttgtgaaatcgtgacacgatttt 28258797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 36988567 - 36988520
Alignment:
Q  515 cagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||    
T  36988567 cagggtgtccaatcgtgacatgattttgggaaaacgtgacacgatttt 36988520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 17865759 - 17865655
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    |||||||||| |||||  | | || |||||||||||| |||||||||||||| ||||  ||||||   |||| || |||||||||||||||| |||||||    
T  17865759 aatcgtgacatgatttcatcatcgtgtcacgattttc-aggcagtgagcatggttttttagggtgctcaatcatgtcacgattttgggaaaatgtgacac 17865661  T
Q  557 gatttt 562  Q
    ||||||    
T  17865660 gatttt 17865655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 21630526 - 21630422
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||| | |||||||||||||| ||||  ||||||   ||||||| ||| ||||||||||||| ||||||    
T  21630526 aatcgtgacacgatttcatcaacgtgtcacgatttcc-aggcagtgagcatggttttttagggtgctcaatcgtgtcacaattttgggaaaacatgacac 21630428  T
Q  557 gatttt 562  Q
    ||||||    
T  21630427 gatttt 21630422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 39483391 - 39483354
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  39483391 aatcgtgtcacgattttgggaaaacgtgacacgatttt 39483354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 562
Target Start/End: Complemental strand, 20522771 - 20522699
Alignment:
Q  491 tttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||| ||||| |||||||| |||| |||||||   ||||||| |||||||||| |||||||||||||||||||    
T  20522771 tttccaggcaatgagcatggtttttcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacgatttt 20522699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 25410170 - 25410119
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  25410170 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 25410119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 30833017 - 30833068
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  30833017 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 30833068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 561
Target Start/End: Original strand, 6266370 - 6266420
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    ||||||||||| | ||||||| ||||||| ||||||| |||||||||||||    
T  6266370 tttgcagggtgccaaatcgtgacacgattgtgggaaatcgtgacacgattt 6266420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 3492281 - 3492232
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||    
T  3492281 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatt 3492232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 9295957 - 9296006
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    |||||||| || | |||||||||||||| |||||||| ||||||||||||    
T  9295957 tttgcaggatgccaaatcgtggcacgatcttgggaaatcgtgacacgatt 9296006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 561
Target Start/End: Original strand, 11098496 - 11098532
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    |||||||||||||| |||||||| |||||||||||||    
T  11098496 aatcgtggcacgatcttgggaaatcgtgacacgattt 11098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 455 - 562
Target Start/End: Original strand, 21593065 - 21593172
Alignment:
Q  455 aagaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgac 554  Q
    ||||||||||||| ||||| | || || |||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  21593065 aagaatcgtgacatgatttggcaaccgtgtcacgattttctaggtagtgagcatggttttcagggtgtccaatcgtgacacaattttgggaaaacgtgac 21593164  T
Q  555 acgatttt 562  Q
    ||||||||    
T  21593165 acgatttt 21593172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 31085988 - 31086091
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | |||| |||| ||||| | |||||||||||||| |||||||||||   ||||||| ||||||||||| |||||||||||||    
T  31085988 aatcgtgacacgatttcatcagcgtgtcatgatttcc-aggcagtgagcatggtttgcagggtgctcaatcgtgtcacgattttggaaaaacgtgacacg 31086086  T
Q  558 atttt 562  Q
    |||||    
T  31086087 atttt 31086091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 5017011 - 5017114
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | || ||||||||||| |||||||||||   ||||||| |||||||||| ||||||||||||||    
T  5017011 aatcgtgacacgatttcatcaacgtgtcacgatttccaag-cagtgagcatggtttgcagggtgctcaatcgtgtcacgattttgagaaaacgtgacacg 5017109  T
Q  558 atttt 562  Q
    |||||    
T  5017110 atttt 5017114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 9183500 - 9183454
Alignment:
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  9183500 agggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 9183454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 508 - 562
Target Start/End: Complemental strand, 22964229 - 22964175
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  22964229 tgttttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttt 22964175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 23824164 - 23824218
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||||  |||||||  |||||||||||||||||||||||||||||    
T  23824164 tgttttgcagggtgttcaatcgtgatacgattttgggaaaacgtgacacgatttt 23824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 562
Target Start/End: Complemental strand, 31980073 - 31979994
Alignment:
Q  483 gtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||| |||||||||||||| |||| |||||||   ||||||| ||||||||||| |||||||||||| |||||    
T  31980073 gtcacgattttc-aggcagtgagcatggtttttcagggtgatcaatcgtgtcacgattttggaaaaacgtgacacaatttt 31979994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 5757047 - 5757098
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  5757047 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgatttt 5757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 23896861 - 23896810
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  23896861 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgatttt 23896810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 22709549 - 22709498
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||||    
T  22709549 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatttt 22709498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 560
Target Start/End: Original strand, 30125127 - 30125162
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30125127 aatcgtggcacgattttgggaaatcgtgacacgatt 30125162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 3809414 - 3809368
Alignment:
Q  516 agggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||| | ||||||| |||||||||||| |||||||||||||||||    
T  3809414 agggtgcccaatcgtgacacgattttggggaaacgtgacacgatttt 3809368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 10076757 - 10076811
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    |||||||||||||| | |||| ||  |||||||||||||||||||| ||||||||    
T  10076757 tgttttgcagggtgcccaatcatgatacgattttgggaaaacgtgatacgatttt 10076811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 21272555 - 21272609
Alignment:
Q  508 tgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||||| ||||||| |||||||||||| || |||| |||||||||    
T  21272555 tgttttgaagggtgtccaatcgtgacacgattttgggtaatcgtgtcacgatttt 21272609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 603718 - 603681
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  603718 aatcgtgacacgattttgggaaaacgtgacatgatttt 603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 2172008 - 2171959
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||| | ||||||| |||||| |||||||| ||||||||||||    
T  2172008 tttgcagggtgccaaatcgtgacacgatcttgggaaatcgtgacacgatt 2171959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 5571847 - 5571884
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  5571847 aatcgtgtcacgattttgagaaaacgtgacacgatttt 5571884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 24435555 - 24435592
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| || |||||||||||||||||||||||||||    
T  24435555 aatcgtgtcatgattttgggaaaacgtgacacgatttt 24435592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 560
Target Start/End: Complemental strand, 6438975 - 6438939
Alignment:
Q  524 taatcgtggcacgattttgggaaaacgtgacacgatt 560  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  6438975 taatcgtggcacgatcttgggaaatcgtgacacgatt 6438939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 561
Target Start/End: Complemental strand, 11857458 - 11857422
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgattt 561  Q
    |||||||||||||| |||||||| |||||||||||||    
T  11857458 aatcgtggcacgatcttgggaaatcgtgacacgattt 11857422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 28155166 - 28155214
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgat 559  Q
    |||||||||||   |||||||||||||| |||||||| |||||||||||    
T  28155166 tttgcagggtgcaaaatcgtggcacgatcttgggaaatcgtgacacgat 28155214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 10959 - 11064
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  || ||| ||||||||||| | | || ||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  10959 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacac 11058  T
Q  557 gatttt 562  Q
    ||||||    
T  11059 gatttt 11064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 562
Target Start/End: Complemental strand, 20963 - 20859
Alignment:
Q  459 atcgtgacacgatttagtaagcgcgtcacgatttt-ctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    |||||||||||||||   ||||| ||||||||||| | | |  ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  20963 atcgtgacacgatttgtgaagcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcatgacacgattttgggaaaacgtgacacg 20864  T
Q  558 atttt 562  Q
    |||||    
T  20863 atttt 20859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 562
Target Start/End: Complemental strand, 81050 - 80945
Alignment:
Q  457 gaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||| |  | || |  |||||||||||||||||||||||  ||| |||||| || ||||||| |||||||||||||||||||| |||    
T  81050 gaatcgtgacacgattttggcatcgtggtacgattttctaggcagtgagcattgttttcagggtatccaatcgtgacacgattttgggaaaacgtggcac 80951  T
Q  557 gatttt 562  Q
    ||||||    
T  80950 gatttt 80945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 457 - 541
Target Start/End: Original strand, 6749 - 6833
Alignment:
Q  457 gaatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgatttt 541  Q
    ||||||||||||||||| |  | || | ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||    
T  6749 gaatcgtgacacgattttggcatcgtggcacgattttctaggcagtgagcatggtttgcagggtgtccaatcgtgacacgatttt 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 562
Target Start/End: Complemental strand, 17767 - 17708
Alignment:
Q  503 gagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  17767 gagcatgttttgcagggtgtccaaccgtgacacgattttgggaaaacgtgacacgatttt 17708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 86168 - 86066
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatgttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacg 557  Q
    ||||||||||||||||  | | || |||||||||| | |||||| ||||||| |||||||||||   |||| || |||||||||||||||||||||||||    
T  86168 aatcgtgacacgatttcatcaacgtgtcacgatttcc-aggcagggagcatggtttgcagggtgctcaatcatg-cacgattttgggaaaacgtgacacg 86071  T
Q  558 atttt 562  Q
    |||||    
T  86070 atttt 86066  T

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Target: scaffold0087 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 36401 - 36452
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  36401 tttgcagggtgtcaaatcgtggcacgattttgtgaaaacgtgacacaatttt 36452  T

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Target: scaffold0510 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 1179 - 1230
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  1179 tttgcagggtgtcaaatcgtggtacgattttgtgaaatcgtgacacgatttt 1230  T

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Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 45727 - 45676
Alignment:
Q  511 tttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||||||||| ||||||||||||||| || |||| ||||||||||||||    
T  45727 tttgcagggtgtcaaatcgtggcacgattctgtgaaatcgtgacacgatttt 45676  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 562
Target Start/End: Complemental strand, 6267 - 6163
Alignment:
Q  458 aatcgtgacacgatttagtaagcgcgtcacgattttctaggcagtgagcatg-ttttgcagggtgtctaatcgtggcacgattttgggaaaacgtgacac 556  Q
    ||||||||||||||||  | | || |||||||||| |||||||| ||||||| |||| || ||| |  ||||||| || ||||||||||||| |||||||    
T  6267 aatcgtgacacgatttcatcaacgtgtcacgattt-ctaggcagcgagcatggtttttcaaggtattcaatcgtgtcatgattttgggaaaatgtgacac 6169  T
Q  557 gatttt 562  Q
    ||||||    
T  6168 gatttt 6163  T

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Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Complemental strand, 3008 - 2971
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  3008 aatcgtgtcacgattttgggaaaacgtgacccgatttt 2971  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 434218 - 434255
Alignment:
Q  525 aatcgtggcacgattttgggaaaacgtgacacgatttt 562  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  434218 aatcgtgacacgattttgggaaatcgtgacacgatttt 434255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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