View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_low_5 (Length: 480)
Name: NF7401_low_5
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 214 - 444
Target Start/End: Complemental strand, 28322749 - 28322518
Alignment:
| Q |
214 |
atttactagcggatcactcatttgaaatcatatcaaaagtttagatagattagtacacaaaaattgacaccaaaaggattccaacctgatgtattaagag |
313 |
Q |
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| T |
28322749 |
atttactagcggatcactcatttgaaatcacatcaaaagtttagatagattagtacacaaaaattgacaccataaggattccaacatgatatattgagag |
28322650 |
T |
|
| Q |
314 |
gatcgcaattcaaaatcttaagatactttattttttggatgatg-tagtgttaggtgaaaatatatgtatttgagaagtcttctaaagaaaaagggagac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28322649 |
gatcgcaattcaaaatcttaagatactttatttttttgatgatgttagtgttaggtgaaaatatatgtatttgagaagtcttgtaaagaaaaagggagac |
28322550 |
T |
|
| Q |
413 |
caagactatatatacgtgtttgagttctctct |
444 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
28322549 |
caagactatatgcacgtgtttgagttctctct |
28322518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 28323006 - 28322802
Alignment:
| Q |
9 |
gtgagatgaacatgataactaatccgatgaatggaccaggtttcatgatttagacacattaaattcctgtgtctccacgtccacca-aaaaccggcatag |
107 |
Q |
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| T |
28323006 |
gtgacatgaacatgataactaagccgatgaatggaccaggtttcatgatttagacacgttaaattcttgtgtctccacgtccaccagaaaaccgacatag |
28322907 |
T |
|
| Q |
108 |
aaaatagaacagcgcctacctaaaccgtgtgaagatttaagtacgtattaacaaaagactcgtgaaaagaagtagagtacaatttacaatgatttatgac |
207 |
Q |
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| T |
28322906 |
aaaatagaacagcgcctacctgaaccgtgtgaagatttaagtgcgtattaacaaaagactcgtgaaaagaa-tagagtacaatttacaatgatttatgac |
28322808 |
T |
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| Q |
208 |
agtgtt |
213 |
Q |
| |
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| |||| |
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| T |
28322807 |
aatgtt |
28322802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 24530606 - 24530553
Alignment:
| Q |
41 |
ggaccaggtttcatgatttagacacattaaattcctgtgtctccacgtccacca |
94 |
Q |
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| T |
24530606 |
ggaccaggtttcatgatttagacacatcaagttccggtgtctccacgtccacca |
24530553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 7818798 - 7818746
Alignment:
| Q |
42 |
gaccaggtttcatgatttagacacattaaattcctgtgtctccacgtccacca |
94 |
Q |
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||||| |||||||||||||| ||||| ||||| | ||||||||| |||||||| |
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| T |
7818798 |
gaccaagtttcatgatttaggcacatcaaattacggtgtctccatgtccacca |
7818746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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