View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_low_6 (Length: 477)
Name: NF7401_low_6
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 40 - 459
Target Start/End: Complemental strand, 10002234 - 10001815
Alignment:
| Q |
40 |
taaattttctaaatgtatgtcataaaattttaaaatttccattatttttatcgagaaaagtgaacagacgaccatgttagcagtttcttataacctgaat |
139 |
Q |
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| T |
10002234 |
taaattttctaaatgtatggcataaaattttaaaatttccattatttttatcgagaaaagtgaacagacgaccatgttagcagtttcttataacctgaat |
10002135 |
T |
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| Q |
140 |
aagcagcttagtttttgttgaattgagctttgaattttgattgttaaaacttgaaaaaattgaatgattagtgattaaagtcatacaagttgaacaatta |
239 |
Q |
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| T |
10002134 |
aagcagcttagtttttgttgaattgacctttgaattttcattggtaaaacttgaaaaaattgaatgattagtgattaaagtcatacaagttgaacaatta |
10002035 |
T |
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| Q |
240 |
ccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataagaacttatcaagccttatttttaactcatctctgtttattttgtattgcacattg |
339 |
Q |
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| T |
10002034 |
ccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataagaacttatcaagccttatttttaactcatctctgtttgttttgtattgcacattg |
10001935 |
T |
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| Q |
340 |
tacagtgctttgaattggtggaccatcatgtccaacttttcttctcaaaaatagctcgaatgatgcctgcagaactctgtgaaaagtaccacctttgtga |
439 |
Q |
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| T |
10001934 |
tacagtgctttgaattggtggaccatcatgttcaacttttcttctcaaaaatagctcgaatgatgcctgcagaactctgtgaaaagtaccacctttgtga |
10001835 |
T |
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| Q |
440 |
gtctgcaacgatttcttcac |
459 |
Q |
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| T |
10001834 |
gtctgcaacgatttcttcac |
10001815 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 12017209 - 12017255
Alignment:
| Q |
62 |
taaaattttaaaatttccattatttttatcgagaaaagtgaacagac |
108 |
Q |
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| T |
12017209 |
taaaattgtataacttccattatttttatcgagaaaagtgaacagac |
12017255 |
T |
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