View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7401_low_7 (Length: 461)
Name: NF7401_low_7
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7401_low_7 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 31115641 - 31115209
Alignment:
| Q |
18 |
ggtttaataccaatgtgggaccattagcacaaagaaaagcaacccttgatccttccttggtagctgcagaggctgctcctaaggttattacagtaatgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115641 |
ggtttaataccaatgtgggaccattagcacaaagaaaagcaacccttgatccttccttggtagctgcagaggctgctcctaaggttattacagtaatgca |
31115542 |
T |
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| Q |
118 |
agatggcaagggtgatttcaaaaccatcactgatgccattaatagtataccaactggaaacaacaaacgtgtgattgtgaaaattggtggtggaaattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115541 |
agatggcaagggtgatttcaaaaccatcactgatgccattaatagtataccaactggaaacaacaaacgtgtgattgtgaaaattggtggtggaaattat |
31115442 |
T |
|
| Q |
218 |
aatgagaaaattaaaattgagaggacaagaccttttgttacattgtatgcagcaccaggaactatgccaaatataacctttggtggcactgcagcaaaat |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115441 |
aatgagaaaattaaaattgagaggacaaaaccttttgttacattgtatgcagcaccaggaactatgccaaatataacctttggtggcactgcagcaaaat |
31115342 |
T |
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| Q |
318 |
atggcacagttgatagtgctacattgattgttgaatcagattattttgtagctgctaacatcatgctttcggtttgtttactatctcctttgtatgacgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31115341 |
atggcacagttgatagtgctacattgattgttgaatcagattattttgtagctgctaacatcatgctttcggtttgtttactatctcctttgtatgacgc |
31115242 |
T |
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| Q |
418 |
tttttgtctgtattctcagtttcatccgtctct |
450 |
Q |
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| T |
31115241 |
tttttgtctgtattctcagtttcacccgtctct |
31115209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 28285224 - 28284864
Alignment:
| Q |
18 |
ggtttaataccaatgtgggaccattagcacaaagaaaagcaacccttgatccttccttggtagctgcagaggctgctcctaaggttattacagtaatgca |
117 |
Q |
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||||||||| |||||| || ||||||| |||||||||| ||||||| ||| | || || |||||||||||| | |||| ||||||| ||||||||| |
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| T |
28285224 |
ggtttaatagcaatgttggtccattagaacaaagaaaaagtgcccttgaccctgcattagtgactgcagaggctggtgctaaagttattaaagtaatgca |
28285125 |
T |
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| Q |
118 |
agatggcaagggtgatttcaaaaccatcactgatgccattaatagtataccaactggaaacaacaaacgtgtgattgtgaaaattggtggtggaaattat |
217 |
Q |
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|||||| | |||||||||||||||||||||||||| |||||||| ||||| || || |||| ||||||||| ||||||| |||||||||||||||||| |
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| T |
28285124 |
agatggtagtggtgatttcaaaaccatcactgatgcgattaatagcatacctaccgggaacaccaaacgtgtaattgtgagcattggtggtggaaattat |
28285025 |
T |
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| Q |
218 |
aatgagaaaattaaaattgagaggacaagaccttttgttacattgtatgcagcaccaggaactatgccaaatataacctttggtggcactgcagcaaaat |
317 |
Q |
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|| |||||||| |||||||| ||||||| |||||||||||||||||||| |||||| || |||||||||| | || | |||||| |||||| | ||| |
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| T |
28285024 |
aacgagaaaatcaaaattgaaaggacaaaaccttttgttacattgtatgggacaccagcaaatatgccaaatttgacatatggtggaactgcaaaacaat |
28284925 |
T |
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| Q |
318 |
atggcacagttgatagtgctacattgattgttgaatcagattattttgtagctgctaacat |
378 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28284924 |
atggcacggttgatagtgctacattgattgttgaatcagattattttgtagctgctaacat |
28284864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 172378 - 172739
Alignment:
| Q |
18 |
ggtttaataccaatgtgggaccattagcacaaagaaaagcaacccttgatccttccttggtagctgcagaggctgctcctaaggttattacagtaatgca |
117 |
Q |
| |
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|||||||||| ||||| || ||||||| ||| |||||| |||||||||||| | ||||| ||||||| |||| | |||| ||||||| ||||||||| |
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| T |
172378 |
ggtttaatacgaatgtaggtccattagaacagagaaaaagtacccttgatcctgcattggtgactgcagaagctggtgctaaagttattaaagtaatgca |
172477 |
T |
|
| Q |
118 |
agatggcaagggtgatttcaaaaccatcactgatgccattaatagtataccaactggaaacaacaaacgtgtgattgtgaaaattggtggtggaaattat |
217 |
Q |
| |
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|||||| | |||||||||||||||||||| || || |||||||| ||||| || ||||||| | ||||||||||||||| ||||||||||||| |||| |
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| T |
172478 |
agatggtagtggtgatttcaaaaccatcaccgacgcaattaatagcatacctaccggaaacaccgtacgtgtgattgtgaacattggtggtggaagttat |
172577 |
T |
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| Q |
218 |
aatgagaaaattaaaattgagaggacaagaccttttgttacattgtatgcagcaccaggaactatgccaaatataacctttggtggcactgcagcaaaat |
317 |
Q |
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|| |||||||| |||||||| ||||||| |||||| |||||||| |||| ||||| |||| |||||||||| |||| | |||||| |||||| | ||| |
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| T |
172578 |
aacgagaaaatcaaaattgataggacaaaacctttcgttacattatatggggcacccggaaatatgccaaatttaacatatggtggaactgcaaaacaat |
172677 |
T |
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| Q |
318 |
atggcacagttgatagtgctacattgattgttgaatcagattattttgtagctgctaacatc |
379 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
172678 |
atggcacagttgatagtgctacattgattgccgaatcagattattttgtagctgctaacatc |
172739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 177891 - 178252
Alignment:
| Q |
18 |
ggtttaataccaatgtgggaccattagcacaaagaaaagcaacccttgatccttccttggtagctgcagaggctgctcctaaggttattacagtaatgca |
117 |
Q |
| |
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|||||||||| ||||| || ||||||| ||| |||||| |||||||||||| | ||||| ||||||| |||| | |||| ||||||| ||||||||| |
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| T |
177891 |
ggtttaatacgaatgtaggtccattagaacagagaaaaagtacccttgatcctgcattggtgactgcagaagctggtgctaaagttattaaagtaatgca |
177990 |
T |
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| Q |
118 |
agatggcaagggtgatttcaaaaccatcactgatgccattaatagtataccaactggaaacaacaaacgtgtgattgtgaaaattggtggtggaaattat |
217 |
Q |
| |
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|||||| | |||||||||||||||||||| || || |||||||| ||||| || ||||||| | ||||||||||||||| ||||||||||||| |||| |
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| T |
177991 |
agatggtagtggtgatttcaaaaccatcaccgacgcaattaatagcatacctaccggaaacaccgtacgtgtgattgtgaacattggtggtggaagttat |
178090 |
T |
|
| Q |
218 |
aatgagaaaattaaaattgagaggacaagaccttttgttacattgtatgcagcaccaggaactatgccaaatataacctttggtggcactgcagcaaaat |
317 |
Q |
| |
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|| |||||||| |||||||| ||||||| |||||| |||||||| |||| ||||| |||| |||||||||| |||| | |||||| |||||| | ||| |
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| T |
178091 |
aacgagaaaatcaaaattgataggacaaaacctttcgttacattatatggggcacccggaaatatgccaaatttaacatatggtggaactgcaaaacaat |
178190 |
T |
|
| Q |
318 |
atggcacagttgatagtgctacattgattgttgaatcagattattttgtagctgctaacatc |
379 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
178191 |
atggcacagttgatagtgctacattgattgccgaatcagattattttgtagctgctaacatc |
178252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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