View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7401_low_9 (Length: 434)

Name: NF7401_low_9
Description: NF7401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7401_low_9
NF7401_low_9
[»] chr4 (23 HSPs)
chr4 (157-331)||(4389897-4390070)
chr4 (12-162)||(4389723-4389876)
chr4 (354-407)||(54936323-54936376)
chr4 (354-407)||(3271917-3271971)
chr4 (354-407)||(3340935-3340988)
chr4 (354-407)||(25483464-25483517)
chr4 (351-411)||(34004557-34004617)
chr4 (356-410)||(1731570-1731624)
chr4 (354-412)||(23817431-23817488)
chr4 (354-412)||(36608636-36608694)
chr4 (354-407)||(18879934-18879987)
chr4 (378-411)||(32941122-32941155)
chr4 (366-407)||(54017582-54017623)
chr4 (368-411)||(4390090-4390133)
chr4 (368-410)||(20825961-20826003)
chr4 (368-406)||(55933113-55933151)
chr4 (358-411)||(11702278-11702331)
chr4 (355-407)||(36629365-36629418)
chr4 (354-407)||(41370485-41370538)
chr4 (354-411)||(49076807-49076863)
chr4 (367-407)||(10246047-10246087)
chr4 (367-407)||(39404146-39404186)
chr4 (367-411)||(44620783-44620827)
[»] chr5 (10 HSPs)
chr5 (354-411)||(34753003-34753059)
chr5 (353-411)||(42405573-42405632)
chr5 (354-411)||(1028493-1028551)
chr5 (367-411)||(6500574-6500618)
chr5 (353-405)||(26899994-26900045)
chr5 (355-407)||(32487521-32487573)
chr5 (353-407)||(27502012-27502066)
chr5 (353-411)||(40296291-40296349)
chr5 (367-411)||(6500946-6500990)
chr5 (365-405)||(15370229-15370269)
[»] chr2 (13 HSPs)
chr2 (353-407)||(16591011-16591066)
chr2 (353-412)||(3673191-3673250)
chr2 (356-407)||(36005860-36005910)
chr2 (366-412)||(14745656-14745702)
chr2 (353-411)||(23346360-23346418)
chr2 (356-407)||(35580703-35580754)
chr2 (365-407)||(962726-962768)
chr2 (354-408)||(37106051-37106105)
chr2 (354-407)||(1770020-1770073)
chr2 (354-411)||(5542602-5542659)
chr2 (354-411)||(6421509-6421566)
chr2 (354-407)||(42514777-42514830)
chr2 (355-407)||(6421859-6421911)
[»] chr1 (8 HSPs)
chr1 (353-408)||(44290434-44290489)
chr1 (353-411)||(32168673-32168732)
chr1 (354-411)||(44290800-44290858)
chr1 (354-411)||(66449-66506)
chr1 (354-407)||(31767138-31767191)
chr1 (374-411)||(48588485-48588522)
chr1 (384-412)||(11977403-11977431)
chr1 (354-406)||(50052001-50052053)
[»] chr8 (11 HSPs)
chr8 (357-407)||(6876842-6876892)
chr8 (354-407)||(9309482-9309535)
chr8 (356-407)||(9309109-9309160)
chr8 (353-411)||(5915991-5916048)
chr8 (367-411)||(40579259-40579303)
chr8 (380-411)||(30441209-30441240)
chr8 (376-407)||(45121655-45121686)
chr8 (366-407)||(3037958-3037999)
chr8 (354-407)||(43274612-43274665)
chr8 (367-411)||(3669811-3669855)
chr8 (367-411)||(3670184-3670227)
[»] scaffold0391 (2 HSPs)
scaffold0391 (354-407)||(1083-1136)
scaffold0391 (354-412)||(1660-1718)
[»] chr7 (7 HSPs)
chr7 (354-411)||(5825562-5825618)
chr7 (353-407)||(30253698-30253752)
chr7 (354-407)||(1085593-1085646)
chr7 (354-411)||(11845315-11845372)
chr7 (366-411)||(30032691-30032736)
chr7 (354-411)||(37533341-37533398)
chr7 (354-411)||(47129493-47129549)
[»] chr6 (8 HSPs)
chr6 (353-411)||(2578419-2578477)
chr6 (354-411)||(1846872-1846928)
chr6 (354-411)||(16454699-16454756)
chr6 (367-411)||(16455031-16455075)
chr6 (354-411)||(2579850-2579906)
chr6 (367-412)||(10074353-10074398)
chr6 (355-407)||(31714796-31714849)
chr6 (354-411)||(35210328-35210384)
[»] chr3 (10 HSPs)
chr3 (367-411)||(32462890-32462934)
chr3 (354-405)||(35946652-35946704)
chr3 (352-407)||(11662079-11662134)
chr3 (367-410)||(29644892-29644935)
chr3 (354-407)||(9239941-9239994)
chr3 (366-411)||(22304317-22304362)
chr3 (366-411)||(22304693-22304738)
chr3 (353-405)||(37990614-37990667)
chr3 (354-411)||(52634799-52634856)
chr3 (367-407)||(1634305-1634345)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 157 - 331
Target Start/End: Original strand, 4389897 - 4390070
Alignment:
Q  157 accaagaagaggtgagtggaatggtgtgttgtttccaggagtgcttgatgtttgatatcgtggagtagtttattgttgcatattggtgcatgagattttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  4389897 accaagaagaggtgagtggaatggtgtgttgtttccaggagtgcttgatgtttgatatcgtagagtagtttattgttgcatattggtacatgagattttg 4389996  T
Q  257 gagtaaaagctagtttgtttaaacaccattggtaaaaagtttgaatttgctgctcacgcacctggtgattgctca 331  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  4389997 gagtaaaagctattttctttaaacaccattggt-aaaagtttgaatttgttgctcacgcacctggtgattgctca 4390070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 4389723 - 4389876
Alignment:
Q  12 agatggacatcaggacattggtaaaagctttggtgtgttttcgcttcatgatgatgaggatgtcttgcaaggcacggtgaaattgcgcaggagcagtaga 111  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4389723 agatgcacatgaggacattggtaaaagctttggtgtgttttcgcttcatgatgatgaggatgtcttgcaaggcacggtgaaattgcgcaggagcagtaga 4389822  T
Q  112 aagaagag---ggtgggagggtagcccaatgcggagtactgaaattccaccaag 162  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  4389823 aagaagagggtggtgggagggtagcccaatgcggagtactgaaattccaccaag 4389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 54936376 - 54936323
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||    
T  54936376 tgttgggtcactgggggagctcgggggactgtccacatcgaggctagaacaacc 54936323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 3271971 - 3271917
Alignment:
Q  354 tgttgggtcattgggggagcttgggag-actgtccacatcgaggctagaacaacc 407  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  3271971 tgttgggtcattgggggagctcggggggactgtccacatcgaggctagaacaacc 3271917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 3340988 - 3340935
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  3340988 tgttgggtcactgggggagctcaggagaccgtccacatcgaggctagaacaacc 3340935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 25483517 - 25483464
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| |||||||||  ||||||| ||||||||||||||||||||||||    
T  25483517 tgttgggtcactgggggagccagggagaccgtccacatcgaggctagaacaacc 25483464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 34004557 - 34004617
Alignment:
Q  351 gcttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||||  | |||||| ||||||| || |||||||||||||||||||||||||    
T  34004557 gcttgttgggtcatgagaggagctcgggagaccgttcacatcgaggctagaacaaccgcac 34004617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 1731570 - 1731624
Alignment:
Q  356 ttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgca 410  Q
    |||||||||||||||||| |||| |||  |||||||||||||||||| |||||||    
T  1731570 ttgggtcattgggggagcctgggggaccatccacatcgaggctagaataaccgca 1731624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 23817431 - 23817488
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcact 412  Q
    |||||||||| ||||||||| ||||| || |||||||||||||||||||||||| ||||    
T  23817431 tgttgggtcactgggggagcctggga-accgtccacatcgaggctagaacaaccacact 23817488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 36608636 - 36608694
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcact 412  Q
    ||||||||||   |||||||||||| ||| |||||||||||||||||||||||| ||||    
T  36608636 tgttgggtcacgaggggagcttgggggaccgtccacatcgaggctagaacaaccacact 36608694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 18879987 - 18879934
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||||||||||||| ||  ||| ||||||||||| ||||||||||||    
T  18879987 tgttgggtcattgggggagctcggaggaccgtccacatcgaagctagaacaacc 18879934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 32941122 - 32941155
Alignment:
Q  378 gagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||||||||||||||||||||||||    
T  32941122 gagactgtccacatcgaggctagaacaaccgcac 32941155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 54017582 - 54017623
Alignment:
Q  366 gggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  54017582 gggggagctagggagaccgtccacatcgaggctagaacaacc 54017623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 4390090 - 4390133
Alignment:
Q  368 gggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||    
T  4390090 gggagcttgggagaccgtccgcatcgaggctagaacaactgcac 4390133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 20826003 - 20825961
Alignment:
Q  368 gggagcttgggagactgtccacatcgaggctagaacaaccgca 410  Q
    |||||| |||| ||||||||||||| |||||||||||||||||    
T  20826003 gggagcatgggggactgtccacatcaaggctagaacaaccgca 20825961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 55933113 - 55933151
Alignment:
Q  368 gggagcttgggagactgtccacatcgaggctagaacaac 406  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  55933113 gggagcttgggggaccgtccacatcgaggctagaacaac 55933151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 11702278 - 11702331
Alignment:
Q  358 gggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||  |||||||  ||| |||||| |||||||||||||||||||||||||    
T  11702278 gggtcatgaggggagcgagggggactgttcacatcgaggctagaacaaccgcac 11702331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 36629418 - 36629365
Alignment:
Q  355 gttgggtcattg-ggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||| ||||||| || | ||| ||||||||||||||||||||||||    
T  36629418 gttgggtcattgaggggagcatgtgggaccgtccacatcgaggctagaacaacc 36629365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 41370538 - 41370485
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| ||||| || | ||| ||| ||||||||||||||||||||||||    
T  41370538 tgttgggtcactggggaagttcgggggaccgtccacatcgaggctagaacaacc 41370485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 49076807 - 49076863
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| | |||||||  || ||| ||||||||||||||||||||||||||||    
T  49076807 tgttgggtcat-gagggagctcaggggacagtccacatcgaggctagaacaaccgcac 49076863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 10246087 - 10246047
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||| ||  ||||||||||||||||||||||||    
T  10246087 ggggagcttgggggagcgtccacatcgaggctagaacaacc 10246047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 39404186 - 39404146
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  39404186 ggggagctcgggggaccgtccacatcgaggctagaacaacc 39404146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 44620827 - 44620783
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||||| ||| ||||||||||||| || |||||||||||    
T  44620827 ggggagcttgggggaccgtccacatcgaggatataacaaccgcac 44620783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 34753003 - 34753059
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||    
T  34753003 tgttgggtcat-gggggagcttgggaaaccgtccacatcgaggctagaacaaccgcac 34753059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 42405573 - 42405632
Alignment:
Q  353 ttgttgggtcattggggg-agcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| |||||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  42405573 ttgttgggtcactggggggagctcgggggaccgtccacatcgaggctagaacaaccgcac 42405632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 1028493 - 1028551
Alignment:
Q  354 tgttgggtcattg-ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||| || |||||||| ||| ||| ||||||||||||||||||||||||||||    
T  1028493 tgttgggtcactgaggggagctagggggaccgtccacatcgaggctagaacaaccgcac 1028551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 6500618 - 6500574
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||||    
T  6500618 ggggagcctgggggaccgtccacatcgaggctagaacaaccgcac 6500574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 26899994 - 26900045
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaa 405  Q
    |||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||    
T  26899994 ttgttgggtcat-gggggagcttgggggaccgtccacatcaaggctagaacaa 26900045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 32487573 - 32487521
Alignment:
Q  355 gttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| |||| |||||||| |||  |||||||||||||||||||||||    
T  32487573 gttgggtcatgggggaagcttgggggaccatccacatcgaggctagaacaacc 32487521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 27502012 - 27502066
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||||  |||||||| ||| ||| ||||||||||||| ||||||||||    
T  27502012 ttgttgggtcatgaggggagctagggggaccgtccacatcgaggatagaacaacc 27502066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 40296291 - 40296349
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||  |||  || |||| ||| ||||||||||||||||||||||||||||    
T  40296291 ttgttgggtcatgagggaggcctgggggaccgtccacatcgaggctagaacaaccgcac 40296349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 6500990 - 6500946
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||| |||| ||| ||||||||||||||||||| ||||||||    
T  6500990 ggggagcctgggggaccgtccacatcgaggctagaataaccgcac 6500946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 15370269 - 15370229
Alignment:
Q  365 tgggggagcttgggagactgtccacatcgaggctagaacaa 405  Q
    |||||||||| ||| ||| ||||||||||||||||||||||    
T  15370269 tgggggagctcgggggaccgtccacatcgaggctagaacaa 15370229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 16591066 - 16591011
Alignment:
Q  353 ttgttgggtcattg-ggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||||| |||||||| |||||||||||||||| |||||||||||||||    
T  16591066 ttgttgggtcattgaggggagctcgggagactgtccacattgaggctagaacaacc 16591011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 3673250 - 3673191
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcact 412  Q
    ||||||||||| |||||||||  ||| ||| |||||||||||||||||||||||| ||||    
T  3673250 ttgttgggtcactgggggagccagggggaccgtccacatcgaggctagaacaaccacact 3673191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 36005860 - 36005910
Alignment:
Q  356 ttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  36005860 ttgggtcat-gggggagctcgagagactgtccacatcgaggctagaacaacc 36005910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 14745656 - 14745702
Alignment:
Q  366 gggggagcttgggagactgtccacatcgaggctagaacaaccgcact 412  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  14745656 gggggagctcgggggactgtccacatcgaggctagaacaaccacact 14745702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 23346418 - 23346360
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||  |||||||| ||| ||| ||||||||| ||||||||||||||||||    
T  23346418 ttgttgggtcatgaggggagctcgggcgaccgtccacatctaggctagaacaaccgcac 23346360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 35580703 - 35580754
Alignment:
Q  356 ttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||||||||   ||| ||| ||||||||||||||||||||||||    
T  35580703 ttgggtcattgggggagtcagggggaccgtccacatcgaggctagaacaacc 35580754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 962768 - 962726
Alignment:
Q  365 tgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  962768 tgggggagttcgggagaccgtccacatcgaggctagaacaacc 962726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 37106105 - 37106051
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccg 408  Q
    ||||||||||   |||||||| ||| ||| |||||||||||||||||||||||||    
T  37106105 tgttgggtcacaaggggagctcgggggaccgtccacatcgaggctagaacaaccg 37106051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 1770073 - 1770020
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||||||||||||| ||  ||  || |||||||||||||||||||||    
T  1770073 tgttgggtcattgggggagctaggaggatcgttcacatcgaggctagaacaacc 1770020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 5542602 - 5542659
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||| |||| ||||||||| ||| ||| |||||||||||| || ||||||||||||    
T  5542602 tgttggatcatggggggagctcgggggaccgtccacatcgagacttgaacaaccgcac 5542659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 6421566 - 6421509
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||   |||||||| ||| ||| |||||||||||| |||||||||||||||    
T  6421566 tgttgggtcacgaggggagctcgggggaccgtccacatcgagactagaacaaccgcac 6421509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 42514830 - 42514777
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||   |||||||| ||| ||| ||||||||||||||||||||||||    
T  42514830 tgttgggtcacgaggggagctcgggggaccgtccacatcgaggctagaacaacc 42514777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 6421911 - 6421859
Alignment:
Q  355 gttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||  |||||||| ||| ||| |||||||||||||| |||||||||    
T  6421911 gttgggtcatgaggggagctcgggggaccgtccacatcgaggccagaacaacc 6421859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 44290434 - 44290489
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccg 408  Q
    ||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||    
T  44290434 ttgttgggtcactgggggagctcgggggaccgtccacatcgaggctagaacaaccg 44290489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 32168673 - 32168732
Alignment:
Q  353 ttgttgggtcattgggggagc-ttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| | ||||||| || || ||||||||||||||||||||||||||||||||    
T  32168673 ttgttgggtcactaggggagccttaggggactgtccacatcgaggctagaacaaccgcac 32168732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 44290800 - 44290858
Alignment:
Q  354 tgttgggtcattggggg-agcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||| |||||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  44290800 tgttgggtcagtggggggagctcgggggaccgtccacatcgaggctagaacaaccgcac 44290858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 66449 - 66506
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||||  |||||||||||   || |||||||| |||||||||||||||||||    
T  66449 tgttgggtcatgaggggagcttggataaccgtccacattgaggctagaacaaccgcac 66506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 31767138 - 31767191
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||  ||| |||||||| ||| |||||||||||| |||||||||||    
T  31767138 tgttgggtcatgagggaagcttgggggaccgtccacatcgagtctagaacaacc 31767191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 48588485 - 48588522
Alignment:
Q  374 ttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  48588485 ttgggcgaccgtccacatcgaggctagaacaaccgcac 48588522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Complemental strand, 11977431 - 11977403
Alignment:
Q  384 gtccacatcgaggctagaacaaccgcact 412  Q
    |||||||||||||||||||||||||||||    
T  11977431 gtccacatcgaggctagaacaaccgcact 11977403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 50052001 - 50052053
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaac 406  Q
    ||||||||||   |||||||| ||| ||||||||||||||||| |||||||||    
T  50052001 tgttgggtcacgaggggagctcgggggactgtccacatcgaggttagaacaac 50052053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 6876842 - 6876892
Alignment:
Q  357 tgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  6876842 tgggtcattgggggagctcgggggaccgtccacatcgaggctagaacaacc 6876892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 9309535 - 9309482
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||    
T  9309535 tgttgggtcactgggggagctcgggggaccgtccacatcgaggctagaacaacc 9309482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 9309160 - 9309109
Alignment:
Q  356 ttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||| |||||||||| ||| ||| ||||||||||||||||||||||||    
T  9309160 ttgggtcactgggggagctcgggggaccgtccacatcgaggctagaacaacc 9309109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Complemental strand, 5916048 - 5915991
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||| |||||||||||| | ||| ||| ||||||||||||||||||||||||||||    
T  5916048 ttgttggatcattgggggagttcggg-gaccgtccacatcgaggctagaacaaccgcac 5915991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 40579259 - 40579303
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||    
T  40579259 ggggagctcgggggacagtccacatcgaggctagaacaaccgcac 40579303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 411
Target Start/End: Complemental strand, 30441240 - 30441209
Alignment:
Q  380 gactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||||||||||||||||||||||    
T  30441240 gactgtccacatcgaggctagaacaaccgcac 30441209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 45121655 - 45121686
Alignment:
Q  376 gggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||||||||||||||||||||||||    
T  45121655 gggagactgtccacatcgaggctagaacaacc 45121686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 3037958 - 3037999
Alignment:
Q  366 gggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||    
T  3037958 gggggagctcgggggaccgtccacatcgaggctagaacaacc 3037999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 43274612 - 43274665
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| || ||||||| ||| ||| ||||||||||||||| ||||||||    
T  43274612 tgttgggtcactgtgggagctcgggggaccgtccacatcgaggctggaacaacc 43274665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 3669855 - 3669811
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||| ||| |||  |||||||||||||||||||||||||||    
T  3669855 ggggagctagggggaccatccacatcgaggctagaacaaccgcac 3669811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 3670227 - 3670184
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||| |||| || ||||||||||||||||||||||||||||    
T  3670227 ggggagctaggga-accgtccacatcgaggctagaacaaccgcac 3670184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 1083 - 1136
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||| ||||||||||||||  || ||||||||||||||||||||||||    
T  1083 tgttgggtcactgggggagcttggggaaccgtccacatcgaggctagaacaacc 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 1660 - 1718
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcact 412  Q
    ||||||||||   |||||||| ||| ||||| |||||||||||||||||||||| ||||    
T  1660 tgttgggtcacgaggggagctagggggactgcccacatcgaggctagaacaaccacact 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 5825562 - 5825618
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||    
T  5825562 tgttgggtcat-gagggagcttgggagaccgtccacatcaaggctagaacaaccgcac 5825618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 30253752 - 30253698
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||||  ||||||| |||| ||| ||||||||||||||| ||||||||    
T  30253752 ttgttgggtcatgaggggagcctgggggacagtccacatcgaggcttgaacaacc 30253698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 1085593 - 1085646
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||  |||||||  ||| ||| ||||||||||||||||||||||||    
T  1085593 tgttgggtcatgaggggagccagggggaccgtccacatcgaggctagaacaacc 1085646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 11845372 - 11845315
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||| |||||||||  ||| ||| ||| ||||||||||||||||||| ||||    
T  11845372 tgttgggtcactgggggagcacgggggaccgtctacatcgaggctagaacaactgcac 11845315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 30032736 - 30032691
Alignment:
Q  366 gggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||| ||| ||| ||||||||||||| ||||||||||||||    
T  30032736 gggggagctcgggggaccgtccacatcgaggatagaacaaccgcac 30032691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 37533341 - 37533398
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||   |||||||  ||| ||| ||||||||||||||||||||||||||||    
T  37533341 tgttgggtcacgaggggagcgcgggggaccgtccacatcgaggctagaacaaccgcac 37533398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 47129549 - 47129493
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||||  |||||||| ||| ||| |||||||||||||||||| |||||||||    
T  47129549 tgttgggtcatgaggggagctcggg-gaccgtccacatcgaggctagatcaaccgcac 47129493  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 411
Target Start/End: Original strand, 2578419 - 2578477
Alignment:
Q  353 ttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||||  |||| ||| ||| ||| ||||||||||||||||||||||||||||    
T  2578419 ttgttgggtcatgaggggggctagggggaccgtccacatcgaggctagaacaaccgcac 2578477  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 1846928 - 1846872
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  1846928 tgttgggtcat-ggggaagctcgggggaccgtccacatcgaggctagaacaaccgcac 1846872  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 16454756 - 16454699
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||   |||||||| ||| ||| ||||||||||||||||||||||||||||    
T  16454756 tgttgggtcacgaggggagctcgggggaccgtccacatcgaggctagaacaaccgcac 16454699  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 16455075 - 16455031
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||    
T  16455075 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcac 16455031  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 2579850 - 2579906
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||| ||  |||||||||||| |||  |||||||||||||||||||||||||||    
T  2579850 tgttgggtaatgaggggagcttggg-gaccttccacatcgaggctagaacaaccgcac 2579906  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 10074353 - 10074398
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcact 412  Q
    ||||||| |||| |||| ||||||||||||||||||||||| ||||    
T  10074353 ggggagcctgggggactatccacatcgaggctagaacaaccacact 10074398  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 31714849 - 31714796
Alignment:
Q  355 gttgggtcattg-ggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||||||| ||||||  |||||||| |||||||||||||||||| |||||    
T  31714849 gttgggtcattgaggggagtctgggagaccgtccacatcgaggctagagcaacc 31714796  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 35210384 - 35210328
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||| |||||||||  ||| ||| |||||||||||||||||| |||||||||    
T  35210384 tgttgggtcactgggggagccaggg-gaccgtccacatcgaggctagagcaaccgcac 35210328  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 32462890 - 32462934
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    ||||||||||| |||| || |||||||||||||||||||||||||    
T  32462890 ggggagcttggaagaccgtacacatcgaggctagaacaaccgcac 32462934  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 35946704 - 35946652
Alignment:
Q  354 tgttgggtcattgggggagctt-gggagactgtccacatcgaggctagaacaa 405  Q
    |||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||    
T  35946704 tgttgggtcactgggggagctttgggggaccgtccacatcgaggctagaacaa 35946652  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 11662134 - 11662079
Alignment:
Q  352 cttgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    ||||||||||| |||| |||||| | | |||||| |||||||||||||||||||||    
T  11662134 cttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaacc 11662079  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 29644892 - 29644935
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaaccgca 410  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||    
T  29644892 ggggagcttgggggaccgtccacatcgaggctaaaacaaccgca 29644935  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 9239994 - 9239941
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||| ||||  |||||||||||| ||| ||||||||||||||||||| ||||    
T  9239994 tgttggatcatgaggggagcttgggggaccgtccacatcgaggctagaaaaacc 9239941  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 22304362 - 22304317
Alignment:
Q  366 gggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  22304362 ggggaagctagggggaccgtccacatcgaggctagaacaaccgcac 22304317  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 22304738 - 22304693
Alignment:
Q  366 gggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||| |||| ||| |||||||||||||||| |||||||||||||||    
T  22304738 ggggaagctagggggactgtccacatcgagactagaacaaccgcac 22304693  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 37990614 - 37990667
Alignment:
Q  353 ttgttgggtcattgggg-gagcttgggagactgtccacatcgaggctagaacaa 405  Q
    |||||||||||||| || ||||| ||| ||| ||||||||||||||||||||||    
T  37990614 ttgttgggtcattgaggagagctcgggggaccgtccacatcgaggctagaacaa 37990667  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Complemental strand, 52634856 - 52634799
Alignment:
Q  354 tgttgggtcattgggggagcttgggagactgtccacatcgaggctagaacaaccgcac 411  Q
    |||||||||| |||||||||| ||| ||| ||| ||||| ||||||||||||| ||||    
T  52634856 tgttgggtcactgggggagctcgggggacagtctacatcaaggctagaacaactgcac 52634799  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 1634305 - 1634345
Alignment:
Q  367 ggggagcttgggagactgtccacatcgaggctagaacaacc 407  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  1634305 ggggagctagggggaccgtccacatcgaggctagaacaacc 1634345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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