View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7402_high_1 (Length: 659)

Name: NF7402_high_1
Description: NF7402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7402_high_1
NF7402_high_1
[»] chr4 (13 HSPs)
chr4 (359-642)||(831964-832247)
chr4 (15-304)||(832311-832604)
chr4 (146-202)||(10464584-10464640)
chr4 (365-422)||(6388207-6388264)
chr4 (161-202)||(10482487-10482528)
chr4 (365-441)||(10464217-10464293)
chr4 (365-441)||(10475155-10475231)
chr4 (146-202)||(10475519-10475575)
chr4 (146-201)||(8443169-8443223)
chr4 (168-202)||(10468348-10468382)
chr4 (365-422)||(6372412-6372469)
chr4 (365-422)||(11971028-11971085)
chr4 (365-441)||(10482129-10482205)
[»] chr7 (1 HSPs)
chr7 (365-422)||(13416957-13417014)
[»] chr2 (2 HSPs)
chr2 (369-422)||(554443-554496)
chr2 (388-443)||(25377020-25377075)
[»] chr8 (1 HSPs)
chr8 (365-444)||(42846471-42846551)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 359 - 642
Target Start/End: Complemental strand, 832247 - 831964
Alignment:
Q  359 caagactccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaagttcaattggcttgtaac 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  832247 caagactccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaagttcaattggcttgtaac 832148  T
Q  459 agctgagtgtatatatgtgtctgtggacagatcaagtgaaataatcacatagtcctcgtcagcaataaacctatgatccaaatcaaaatatcctgaatta 558  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  832147 agctgagtgtatgtatgtgtctgtggagagatcaagtgaaataatcacatagtcctcgtcagtaataaacctatgatccaaatcaaaatatcctgaatta 832048  T
Q  559 gagtaatcacgaagagccaaccagttaataataccattcaaaagcacaccattagatttgtaaactggaatcacagggaaaggt 642  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  832047 gagtaatcacgaagagccaaccagttaataataccattcaaatgcacaccattagatttgtaagctggaatcacagggaaaggt 831964  T

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Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 832604 - 832311
Alignment:
Q  15 atatagaaaatatcattatctaagttacaataagcataaataacaagacaatggtcaataaataattactcaacaattaataccgagaagctaattaagc 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  832604 atatagaaaatatcatcatctaagttacaataagcataaataacaagaaaatggtcaataaataataactcaacaattaataccgacaagctaattaagc 832505  T
Q  115 agcaaagcaatcacacaatctattattataacaacataaacgaagta--------acatagattcaaacaagtaaaatgtggaagagaaactcactcact 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||    
T  832504 agcaaagcaatcacacaatctattattataacaacaaaaacgaagtaattaacatacatagattcaaacaagaaaaatgtggaagagaaactcactcact 832405  T
Q  207 tttaataaggctgcaccaaactttcaacgtaatactgggcctcataccacatcatacccttacttaattcctccaattctcactactctatcgcctgt 304  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  832404 tttaataaagctgcaccaaactttcaacgtaatactgggcctcggaccacatcatacccttac----ttcctccaattctcactactctatcgcctgt 832311  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 10464640 - 10464584
Alignment:
Q  146 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact 202  Q
    ||||||||| ||||||| ||| |||| ||||||||| ||||||||||||||||||||    
T  10464640 caacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcact 10464584  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 6388264 - 6388207
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 422  Q
    ||||||||||||||||| | |  ||| |||| ||||||||||||||||||||||||||    
T  6388264 tccttcatttgccatataacagaatgagtttcctcaaaatcatgacaaaaacaaagac 6388207  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 10482528 - 10482487
Alignment:
Q  161 aacatagattcaaacaagtaaaatgtggaagagaaactcact 202  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcact 10482487  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 441
Target Start/End: Complemental strand, 10464293 - 10464217
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaag 441  Q
    ||||||||||||||||| | || |||||| || |  ||||||| ||||||||||||||  ||| |||||||||||||    
T  10464293 tccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaag 10464217  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 441
Target Start/End: Complemental strand, 10475231 - 10475155
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaag 441  Q
    ||||||||||||||||| | || |||||| || |  ||||||| ||||||||||||||  ||| |||||||||||||    
T  10475231 tccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaaaaccacaag 10475155  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 10475575 - 10475519
Alignment:
Q  146 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcact 202  Q
    ||||||| | ||| ||| ||| |||||||||||||| ||||||||||||||||||||    
T  10475575 caacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcact 10475519  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 8443169 - 8443223
Alignment:
Q  146 caacataaacgaagtaacatagattcaaacaagtaaaatgtggaagagaaactcac 201  Q
    ||||||| ||||||||||| | |||||||||||| |||||||||| ||||||||||    
T  8443169 caacatacacgaagtaacaaaaattcaaacaagt-aaatgtggaatagaaactcac 8443223  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 10468382 - 10468348
Alignment:
Q  168 attcaaacaagtaaaatgtggaagagaaactcact 202  Q
    |||||||||||||| ||||||||||||||||||||    
T  10468382 attcaaacaagtaatatgtggaagagaaactcact 10468348  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 6372469 - 6372412
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 422  Q
    ||||||||||||||||| |||| |||||||| |||| | | || ||||||||||||||    
T  6372469 tccttcatttgccatataataaaatgggtttcctcatagttattacaaaaacaaagac 6372412  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 11971028 - 11971085
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 422  Q
    ||||||||||||||||| | || ||| ||||  |||||||||||| ||||||||||||    
T  11971028 tccttcatttgccatataacaaaatgagtttgttcaaaatcatgagaaaaacaaagac 11971085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 441
Target Start/End: Complemental strand, 10482205 - 10482129
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaag 441  Q
    ||||||||||||||||| | || ||  |||| |||| ||||||||| |||||||||||  ||| |||||||| ||||    
T  10482205 tccttcatttgccatataacaaaataagtttcctcataatcatgaccaaaacaaagacaatccatcaaaaccgcaag 10482129  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 13416957 - 13417014
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 422  Q
    ||||||||||||||||| |||| || |||||||| |||||||| | ||||||||||||    
T  13416957 tccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaaagac 13417014  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 554496 - 554443
Alignment:
Q  369 tcatttgccatatcataagatgggttttctcaaaatcatgacaaaaacaaagac 422  Q
    ||||||||||||| ||||||||||||  ||||||||| ||| ||||||||||||    
T  554496 tcatttgccatataataagatgggttccctcaaaatcgtgagaaaaacaaagac 554443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 25377075 - 25377020
Alignment:
Q  388 atgggttttctcaaaatcatgacaaaaacaaagactttccctcaaaaccacaagtt 443  Q
    |||| ||| ||| ||||||||||||||||||||||  ||| |||||||||||||||    
T  25377075 atggttttcctccaaatcatgacaaaaacaaagacagtccgtcaaaaccacaagtt 25377020  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 42846471 - 42846551
Alignment:
Q  365 tccttcatttgccatatcataagatgggttttctcaaaatcatg-acaaaaacaaagactttccctcaaaaccacaagttc 444  Q
    |||||||||||||| || | || |||||||| |||||||||||| | |||||  |||| | ||||||||||||||||||||    
T  42846471 tccttcatttgccaaataacaaaatgggtttcctcaaaatcatgaaaaaaaattaagagtgtccctcaaaaccacaagttc 42846551  T

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