View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7402_high_15 (Length: 231)
Name: NF7402_high_15
Description: NF7402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7402_high_15 |
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| [»] scaffold0411 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 50805394 - 50805194
Alignment:
| Q |
17 |
atattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaattagccatgttacttaagatagcatacccatgaaagtccacaattagga |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805394 |
atattgagaacttcatttaagaagcaaaaacgtttttttattgtttgcaaattagccatgttacttaagatagcatacccatgaaagtccacaattagga |
50805295 |
T |
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| Q |
117 |
attgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805294 |
attgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgata |
50805195 |
T |
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| Q |
217 |
t |
217 |
Q |
| |
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| |
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| T |
50805194 |
t |
50805194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 50870483 - 50870683
Alignment:
| Q |
17 |
atattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaattagccatgttacttaagatagcatacccatgaaagtccacaattagga |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870483 |
atattgagaacttcatttaagaagcaaaaacgtttttttattgtttgcaaattagccatgttacttaagatagcatacccatgaaagtccacaattagga |
50870582 |
T |
|
| Q |
117 |
attgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870583 |
attgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgata |
50870682 |
T |
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| Q |
217 |
t |
217 |
Q |
| |
|
| |
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| T |
50870683 |
t |
50870683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 19056793 - 19056993
Alignment:
| Q |
17 |
atattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaattagccatgttacttaagatagcatacccatgaaagtccacaattagga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19056793 |
atattgagaacttcatttaagaagcaaaaacgtttttttattgtttgcaaattagccatgttacttaagatagcttacccatgaaagtccacaattagga |
19056892 |
T |
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| Q |
117 |
attgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19056893 |
attgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatgaagcatgctatgttgata |
19056992 |
T |
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| Q |
217 |
t |
217 |
Q |
| |
|
| |
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|
| T |
19056993 |
t |
19056993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 40705465 - 40705612
Alignment:
| Q |
70 |
agccatgttacttaagatagcatacccatgaaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacg |
169 |
Q |
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||||||||||||||||||||| || | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40705465 |
agccatgttacttaagatagcttagcaatgaaagtccacaattaggaattgatccatcaaaaccatattgatttggtgttttggtttgctgatagacacg |
40705564 |
T |
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| Q |
170 |
acaagcttttataccagagcaaataaatgaagcatgctatgttgatat |
217 |
Q |
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| T |
40705565 |
acaagcttttacaccagagcaaataaatgaagcatgctatgttgatat |
40705612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 11494 - 11349
Alignment:
| Q |
70 |
agccatgttacttaagatagcatacccatgaaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacg |
169 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11494 |
agccatgttacttaagatagcttaccaatgaaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttgatttgctgatagacacg |
11395 |
T |
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| Q |
170 |
acaagcttttataccagagcaaataaatgaagcatgctatgttgat |
215 |
Q |
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||||||||||| || | | ||||||||||||||||||||||||||| |
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| T |
11394 |
acaagcttttacacaaaaccaaataaatgaagcatgctatgttgat |
11349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 11831 - 11778
Alignment:
| Q |
17 |
atattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaatta |
70 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
11831 |
atattgagaacttaatttaagaagcaaaaacgcttttttattgtttgcaaatta |
11778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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