View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7402_low_16 (Length: 225)

Name: NF7402_low_16
Description: NF7402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7402_low_16
NF7402_low_16
[»] chr3 (3 HSPs)
chr3 (18-210)||(2293451-2293643)
chr3 (18-210)||(17779177-17779369)
chr3 (18-210)||(19080478-19080670)
[»] chr1 (3 HSPs)
chr1 (18-210)||(18213626-18213818)
chr1 (123-210)||(165808-165895)
chr1 (18-210)||(140414-140606)
[»] chr2 (4 HSPs)
chr2 (18-210)||(18598549-18598741)
chr2 (18-210)||(19387334-19387526)
chr2 (18-155)||(18604203-18604340)
chr2 (18-210)||(29559852-29560044)
[»] chr6 (2 HSPs)
chr6 (18-210)||(19887520-19887712)
chr6 (18-210)||(19822430-19822622)
[»] chr8 (5 HSPs)
chr8 (119-210)||(267757-267848)
chr8 (119-210)||(648073-648164)
chr8 (119-210)||(833808-833899)
chr8 (102-210)||(9505989-9506097)
chr8 (101-210)||(290923-291032)
[»] chr7 (1 HSPs)
chr7 (17-208)||(12861509-12861700)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 2293451 - 2293643
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2293451 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataagatcatcggagcacgattttacgatgtgagagaattaagtgcaagagacagtg 2293550  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2293551 ctggtcatggaacccacacatcatcaatagcaggtggacgtgaagtgaagggtgtgagcttttttggtcttgcagaaggaactgcaagaggtg 2293643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 17779369 - 17779177
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||||||||||  ||| |||||||| |||||||||||||| || ||||| |||||||||||||||| ||   ||||  | ||||||||| | |||     
T  17779369 tggaggggagtttgtgcagggggtggtaattttagttgcaacaacaagatcattggagcacgattttatggtgatggagatgtgagtgcaagatatagtt 17779270  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    |||||||| ||||||||||| ||||||  ||||||||| | || ||| ||| ||||| ||||| |||| ||||| |||| |||||||||||||    
T  17779269 ttggtcatagaacccacacagcatcaacggcaggtggaagagaggtggaggatgtgagcttttatggttttgcaaaaggcactgcaagaggtg 17779177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 19080670 - 19080478
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||||||||||  ||| |||||||| |||||||||||||| || ||||| |||||||||||||||| ||   ||||  | ||||||||| | |||     
T  19080670 tggaggggagtttgtgcagggggtggtaattttagttgcaacaacaagatcattggagcacgattttatggtgatggagatgtgagtgcaagatatagtt 19080571  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    |||||||| ||||||||||| ||||||  ||||||||| | || ||| ||| ||||| ||||| |||| ||||| |||| |||||||||||||    
T  19080570 ttggtcatagaacccacacagcatcaacggcaggtggaagagaggtggaggatgtgagcttttatggttttgcaaaaggcactgcaagaggtg 19080478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 18213626 - 18213818
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||||||||||  ||| ||| || |||| | ||| ||||| || |||||||||||||||||||| | ||   ||||  | ||||||||||| |  |    
T  18213626 tggaggggagtttgtgcaggtggtagtgacttcaattgtaacaagaagatcatcggagcacgattttacgctgatggagatgtgagtgcaagagatatag 18213725  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    |||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||| ||||| |||| ||||| |||| | |||| ||||||    
T  18213726 ttggtcatggaacccacacatcatcaatagtaggtggacgtgaggtgaaaggtgtgagcttttatggtattgcaaaaggcattgcacgaggtg 18213818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 165895 - 165808
Alignment:
Q  123 catggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    ||||||||||||||| |||| |||| ||||||| |||| ||||| ||||| | ||||| ||||  |||| |||||| |||||||||||    
T  165895 catggaacccacacaacatcgatagtaggtggacgtgaggtgaaaggtgtaagcttttatggttatgcaaaaggaattgcaagaggtg 165808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 140606 - 140414
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||||||||||  ||| ||| || |||| | ||| ||||| || |||||||||||||||||||| |   |  ||||  | |||||||||||         
T  140606 tggaggggagtttgtgcaggtggtagtgacttcaattgtaacaagaagatcatcggagcacgattttacggcattggagatgtgagtgcaagagatgaat 140507  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    | |||||||||||||| |||||||| |||| ||||||| |||| || || |||| || ||||| ||||  |||| |||| | |||||||||||    
T  140506 tgggtcatggaacccatacatcatcgatagtaggtggacgtgaggtaaaaggtgcgagcttttatggttatgcaaaaggcattgcaagaggtg 140414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 18598549 - 18598741
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||| ||||||||||   || |||||||| |||||||||||||| || |||||||||||||||||||| | |||  ||||  | |||||||||||||       
T  18598549 tggaagggagtttgtgctggtggtggtaattttagttgcaacaagaagatcatcggagcacgattttacggtgttggagatgtgagtgcaagagacaaat 18598648  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
     ||||||||||||||||||| |||| |||||||||||| | || ||||| | ||| | ||||| |||||| ||| | |||| |||||||||||    
T  18598649 ctggtcatggaacccacacagcatccatagcaggtggacgagaggtgaatgatgtaagcttttatggtctcgcaaatggaattgcaagaggtg 18598741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 19387334 - 19387526
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||| ||||||   || |||| ||| || ||||||||||| || |||||||||||||||||||| | |||  ||||  | |||||||||||||       
T  19387334 tggaggggggtttgtgatggtggtgttaatttcagttgcaacaagaagatcatcggagcacgattttacgctgttggagatgtgagtgcaagagacaaat 19387433  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    ||||||||||||||||||||||||| ||||  |||||| |||| ||||| | ||||| ||||| |||||||||  | |||| |||||||||||    
T  19387434 ttggtcatggaacccacacatcatccatagttggtggacgtgaggtgaatgatgtgagcttttatggtcttgcgaatggaattgcaagaggtg 19387526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 18604203 - 18604340
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    ||||||||||||||| | || |||||||| |||||||||||||| || ||| |||||||||||||||| | |||  ||||  | |||||||||||||       
T  18604203 tggaggggagtttgtgttggtggtggtaattttagttgcaacaagaagatcttcggagcacgattttacggtgttggagatgtgagtgcaagagacaaat 18604302  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtgga 155  Q
     ||||||||||| ||||||| |||| ||||||||||||    
T  18604303 ctggtcatggaatccacacaacatccatagcaggtgga 18604340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 29559852 - 29560044
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatg-tgagagaattaagtgcaagagacagt 116  Q
    |||||||||||||||  ||| |||||||| || ||||||||||| || ||||| |||||||||||||||| || ||| | |  | |||||||||||  ||    
T  29559852 tggaggggagtttgtgcagggggtggtaatttcagttgcaacaacaagatcattggagcacgattttatggtgatga-atatgtgagtgcaagagatggt 29559950  T
Q  117 gttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
       ||||||||||| |||  | |||||| | ||||||||  ||| || |||| ||||| ||||| |||||||||  |||| |||||||||||||    
T  29559951 tccggtcatggaactcacgtagcatcaacaacaggtggaattgaggttaaggatgtgagcttttatggtcttgctaaaggcactgcaagaggtg 29560044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 19887520 - 19887712
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||||||||||  ||||||   ||| || ||||||||||| || |||||||| ||||||||||||||||  | |||    ||||||||||||  |     
T  19887520 tggaggggagtttgtgcaggcggcactaatttcagttgcaacaacaagatcatcggggcacgattttatgatgataaagataagagtgcaagagacgttt 19887619  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    | ||||||||| |||| ||| |||||| |||||||||| || | ||||| | ||| | ||||| |||||||||| |||| |||||||||||||    
T  19887620 tgggtcatggatcccatacagcatcaacagcaggtggaagtcaggtgaatgatgtcagcttttatggtcttgcaaaaggcactgcaagaggtg 19887712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 19822430 - 19822622
Alignment:
Q  18 tggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaagtgcaagagacagtg 117  Q
    |||||||||||||||  ||| ||   ||| |||||||||||||| || |||||||| ||||||||||||||||  | |||    |||||||||||   |     
T  19822430 tggaggggagtttgtgcaggaggcactaattttagttgcaacaacaagatcatcggggcacgattttatgatgataaagataagagtgcaagagatgtta 19822529  T
Q  118 ttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    | ||||||||| |||| ||| |||||| |||||||||| || | ||||| | ||| | ||||| |||||||||| |||| |||||||||||||    
T  19822530 taggtcatggatcccatacagcatcaacagcaggtggaagtcaggtgaatgatgtcagcttttatggtcttgcaaaaggcactgcaagaggtg 19822622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 267757 - 267848
Alignment:
Q  119 tggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    |||||||||||||||||||||||| | ||| || ||| |||| ||||||||||| | ||||| |||||||||| |||| |||||||||||||    
T  267757 tggtcatggaacccacacatcatcgacagccggcggaagtgaggtgaagggtgtaagcttttatggtcttgcaaaaggcactgcaagaggtg 267848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 648164 - 648073
Alignment:
Q  119 tggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    |||||||||||||||||||||||| | ||| || ||| |||| ||||||||||| | ||||| |||||||||| |||| |||||||||||||    
T  648164 tggtcatggaacccacacatcatcgacagccggcggaagtgaggtgaagggtgtaagcttttatggtcttgcaaaaggcactgcaagaggtg 648073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 833899 - 833808
Alignment:
Q  119 tggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagaggtg 210  Q
    |||||||||||||||||||||||| | ||| || ||| |||| ||||||||||| | ||||| |||||||||| |||| |||||||||||||    
T  833899 tggtcatggaacccacacatcatcgacagccggcggaagtgaggtgaagggtgtaagcttttatggtcttgcaaaaggcactgcaagaggtg 833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 9505989 - 9506097
Alignment:
Q  102 agtgcaagagacagtgttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactg 201  Q
    ||||||||||||  || ||||||||||||||||||  ||||||  ||| ||||| | || |||| ||| |||| ||||| |||||||||| |||| || |    
T  9505989 agtgcaagagactatggtggtcatggaacccacacggcatcaacggcaagtggaagagaggtgatgggagtgagcttttatggtcttgcaaaaggcaccg 9506088  T
Q  202 caagaggtg 210  Q
    |||||||||    
T  9506089 caagaggtg 9506097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 290923 - 291032
Alignment:
Q  101 aagtgcaagagacagtgttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaact 200  Q
    |||||||||||||  || ||||||||||||||||||  ||||||  ||| ||||| | || ||| |||| |||| ||||| || ||||||| |||| ||     
T  290923 aagtgcaagagactatggtggtcatggaacccacacggcatcaacggcaagtggaagagaggtggagggagtgagcttttatgatcttgcaaaaggcacc 291022  T
Q  201 gcaagaggtg 210  Q
    ||||||||||    
T  291023 gcaagaggtg 291032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 12861700 - 12861509
Alignment:
Q  17 atggaggggagtttgtttaggcggtggtaactttagttgcaacaataaaatcatcggagcacgattttatgatgtgagagaattaag-tgcaagagacag 115  Q
    ||||||||||||||||  ||| |||||||| || ||||||||||| || ||||| |||||||||||||| | ||   ||| || ||| ||||||||| |     
T  12861700 atggaggggagtttgtgcaggtggtggtaatttcagttgcaacaagaagatcattggagcacgattttacggtgatggag-atcaagatgcaagagatac 12861602  T
Q  116 tgttggtcatggaacccacacatcatcaatagcaggtggatgtgaagtgaagggtgtgaacttttttggtcttgcagaaggaactgcaagagg 208  Q
    ||  |||||||||||||||||| ||||||  || |||||| | ||||| || | ||  | ||||| ||||||||| ||||| |||||||||||    
T  12861601 tggaggtcatggaacccacacagcatcaaccgcgggtggaagagaagtcaaagatgcaagcttttatggtcttgctgaaggcactgcaagagg 12861509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University