View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7402_low_3 (Length: 597)

Name: NF7402_low_3
Description: NF7402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7402_low_3
NF7402_low_3
[»] chr8 (15 HSPs)
chr8 (16-318)||(6582366-6582669)
chr8 (18-328)||(6660626-6660936)
chr8 (18-328)||(6741028-6741338)
chr8 (319-582)||(6585540-6585803)
chr8 (324-582)||(6741610-6741868)
chr8 (324-582)||(6661208-6661466)
chr8 (16-178)||(6758541-6758704)
chr8 (81-177)||(6613108-6613204)
chr8 (192-281)||(6613251-6613337)
chr8 (192-295)||(6657567-6657665)
chr8 (192-295)||(6737969-6738067)
chr8 (192-295)||(6748606-6748704)
chr8 (21-79)||(6612995-6613053)
chr8 (296-367)||(6612124-6612199)
chr8 (107-144)||(6746170-6746207)
[»] scaffold0470 (4 HSPs)
scaffold0470 (81-177)||(2396-2492)
scaffold0470 (192-281)||(2539-2625)
scaffold0470 (21-79)||(2283-2341)
scaffold0470 (296-367)||(1412-1487)
[»] chr4 (1 HSPs)
chr4 (539-582)||(50781809-50781852)
[»] chr1 (2 HSPs)
chr1 (537-582)||(32980415-32980460)
chr1 (508-564)||(3753945-3754001)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 6582366 - 6582669
Alignment:
16 ataactttcactaccataaaacctaaaacactatcccataaaattaagtgtgtatttaaatttacggtaaatttaaagaaa-tcacggattttgtcaaaa 114  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
6582366 ataactttcactaccacaaaacctaaaacactatcccgtaaaattaaatgtgtatttaaatttacggtaaatttaaagaaaatcacggattttgtcaaaa 6582465  T
115 ccattttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatcacacatactactaatatagtactccacttgtttggaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6582466 ccattttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatcacacatactactaatatagtactccacttgtttggaa 6582565  T
215 aggaaaaggtccctcttgataatgatagatgttcacaaataagatgcagttagttttgacaaatcaacagttttcccctaaatagcaagatgttcttgat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
6582566 aggaaaaggtccctcttgataatgatagatgttcacaaataagatgtagttagttttgacaaatcaacggttttcccctaaatagcaagatgttcttgat 6582665  T
315 atta 318  Q
    ||||    
6582666 atta 6582669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 6660626 - 6660936
Alignment:
18 aactttcactaccataaaacctaaaacactatcccataaaattaagtgtgtatttaaatttacggtaaatttaaagaaa-tcacggattttgtcaaaacc 116  Q
    |||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
6660626 aactttcactaccacaaaacctaaaacactatcccgtataattaagtatgtatttaaatttacggtaaatttaaagaaaatcacggattttgtcgaaacc 6660725  T
117 attttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatcacacatactactaatatagtactccacttgtttggaaag 216  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||    
6660726 attttgattcgaaaccattcacttcaatgctatcaatttgcactatgtagggccttccataatacatatcactaatatagtactccacttgtttggaaag 6660825  T
217 gaaaaggtccctcttgataatgatagatgttcacaaataagatgcagttagttttgacaaatcaacagttttcccctaaatagcaagatgttcttgatat 316  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
6660826 gaaaaggtccctcttgataaagaaagatgttcacaaataagatgtagttagttttgacaaatcaacggttttcccataaatagcaagatgttcttgatat 6660925  T
317 taatattgtact 328  Q
    | ||||||||||    
6660926 t-atattgtact 6660936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 6741028 - 6741338
Alignment:
18 aactttcactaccataaaacctaaaacactatcccataaaattaagtgtgtatttaaatttacggtaaatttaaagaaa-tcacggattttgtcaaaacc 116  Q
    |||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
6741028 aactttcactaccacaaaacctaaaacactatcccgtataattaagtatgtatttaaatttacggtaaatttaaagaaaatcacggattttgtcgaaacc 6741127  T
117 attttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatcacacatactactaatatagtactccacttgtttggaaag 216  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||    
6741128 attttgattcgaaaccattcacttcaatgctatcaatttgcactatgtagggccttccataatacatatcactaatatagtactccacttgtttggaaag 6741227  T
217 gaaaaggtccctcttgataatgatagatgttcacaaataagatgcagttagttttgacaaatcaacagttttcccctaaatagcaagatgttcttgatat 316  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
6741228 gaaaaggtccctcttgataaagaaagatgttcacaaataagatgtagttagttttgacaaatcaacggttttcccataaatagcaagatgttcttgatat 6741327  T
317 taatattgtact 328  Q
    | ||||||||||    
6741328 t-atattgtact 6741338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 319 - 582
Target Start/End: Original strand, 6585540 - 6585803
Alignment:
319 atattgtactaaacaagtcctttaagtttatttttatccatctcttaaatgttatttttcaa-tttgcttatccctcactctaaaattcctattttgtcc 417  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
6585540 atattgtaccaaacaagtc-tttaagtttatttttatccatctcttaaatgttattttttaaatttgcttatccctcactctaaaattcctattttgtcc 6585638  T
418 tcatttgaattatataattcaaatccttttcgcagatttttggtttatataatttgagttctgcgaaacttgaaaaacatattatagtcgatacgaaggt 517  Q
    ||||| ||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
6585639 tcattcgaaatatataattcaaatccttttcgcagaattttggataatataatttgagttctgccaaacttgaaaaacatattatagttgatacgaaggt 6585738  T
518 cactattaaccatcgtatcatccccataaaaattgcacaacaattttaaggatgatatgaatggt 582  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6585739 cactgttaaccatcgtatcatccccataaaaattgcacaacaattttaaggatgatatgaatggt 6585803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 324 - 582
Target Start/End: Original strand, 6741610 - 6741868
Alignment:
324 gtactaaacaagtcctttaagtttatttttatccatctcttaaatgttatttttcaatttgcttatccctcactctaaaattcctattttgtcctcattt 423  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
6741610 gtaccaaacaagtcctttaagtttatttttatccatctcttaaatgttatttttaaatttgcttatccctcactctaaaattcctattttgtcctcattc 6741709  T
424 gaattatataattcaaatccttttcgcagatttttggtttatataatttgagttctgcgaaacttgaaaaacatattatagtcgatacgaaggtcactat 523  Q
    | ||||||||||||||||||||||| || | |||||| ||  |||||||||||||| | |||| |||||||||||||||||| ||||||||||||| | |    
6741710 ggattatataattcaaatccttttctcataattttggatttcataatttgagttctaccaaacctgaaaaacatattatagttgatacgaaggtcattgt 6741809  T
524 taaccatcgtatcatccccataaaaattgcacaacaattttaaggatgatatgaatggt 582  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
6741810 taaccatcgtatcatccccttaaaaattgcacaacaattttaaggatggtatgagtggt 6741868  T

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Target: chr8; HSP #6
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 324 - 582
Target Start/End: Original strand, 6661208 - 6661466
Alignment:
324 gtactaaacaagtcctttaagtttatttttatccatctcttaaatgttatttttcaatttgcttatccctcactctaaaattcctattttgtcctcattt 423  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
6661208 gtaccaaacaagtcctttaagtttatttttatccatctcttaaatgttatttttaaatttgcttatccctcactctaaaattcctattttgtcctcattc 6661307  T
424 gaattatataattcaaatccttttcgcagatttttggtttatataatttgagttctgcgaaacttgaaaaacatattatagtcgatacgaaggtcactat 523  Q
    | ||||||||||||||||||||||| || |  ||||| ||  |||||||||||||| | |||| |||||||||||||||||| ||||||||||||| | |    
6661308 ggattatataattcaaatccttttcacaaaactttggatttcataatttgagttctaccaaacctgaaaaacatattatagttgatacgaaggtcattgt 6661407  T
524 taaccatcgtatcatccccataaaaattgcacaacaattttaaggatgatatgaatggt 582  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
6661408 taaccatcgtatcatccccttaaaaattgcacaacaattttaaggatggtatgagtggt 6661466  T

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Target: chr8; HSP #7
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 6758541 - 6758704
Alignment:
16 ataactttcactaccataaaacctaaaacactatcccataaaattaagtgtgtatttaaatttacggtaaatttaaagaaa-tcacggattttgtcaaaa 114  Q
    ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
6758541 ataactttcactaccgtaaaacctaaaacactatcccgtataattaagtgtgtatttaaatttacgataaatttaaagaaaatcacggattttgtcaaaa 6758640  T
115 ccattttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6758641 ccattttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatca 6758704  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 6613108 - 6613204
Alignment:
81 ggtaaatttaaagaaatcacggattttgtcaaaaccattttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatc 177  Q
    |||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
6613108 ggtaaattaaaaaaaatcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctatgaatttgcactatgtaggtccttccatc 6613204  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 6613251 - 6613337
Alignment:
192 tatagtactccacttgtttggaaaggaaaaggtccctctt--gataatgatagatgttcacaaataagatgcagttagttttgacaaatcaa 281  Q
    ||||||||||||||||||||||||     |||||||||||  ||||||||||||||||||||||| ||||| ||| ||  ||||||||||||    
6613251 tatagtactccacttgtttggaaa-----aggtccctcttttgataatgatagatgttcacaaattagatgtagtcagggttgacaaatcaa 6613337  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 6657567 - 6657665
Alignment:
192 tatagtactccacttgtttggaaaggaaaaggtccctcttgataatgatagatgttcacaaataagatgcagttagttttgacaaatcaac-agttttcc 290  Q
    ||||||||||||||||||||||||     ||| || |||||||||||||||||||||||| || ||||| |||||| | ||||||||||||  |||||||    
6657567 tatagtactccacttgtttggaaa-----aggcccatcttgataatgatagatgttcacatattagatgtagttag-tgtgacaaatcaacgggttttcc 6657660  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 6737969 - 6738067
Alignment:
192 tatagtactccacttgtttggaaaggaaaaggtccctcttgataatgatagatgttcacaaataagatgcagttagttttgacaaatcaac-agttttcc 290  Q
    ||||||||||||||||||||||||     ||| || |||||||||||||||||||||||| || ||||| |||||| | ||||||||||||  |||||||    
6737969 tatagtactccacttgtttggaaa-----aggcccatcttgataatgatagatgttcacatattagatgtagttag-tgtgacaaatcaacgggttttcc 6738062  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 6748606 - 6748704
Alignment:
192 tatagtactccacttgtttggaaaggaaaaggtccctcttgataatgatagatgttcacaaataagatgcagttagttttgacaaatcaac-agttttcc 290  Q
    ||||||||||||||||||||||||     ||| || |||||||||||||||||||||||| || ||||| |||||| | ||||||||||||  |||||||    
6748606 tatagtactccacttgtttggaaa-----aggcccatcttgataatgatagatgttcacatattagatgtagttag-tgtgacaaatcaacgggttttcc 6748699  T

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Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 6612995 - 6613053
Alignment:
21 tttcactaccataaaacctaaaacactatcccataaaattaagtgtgtatttaaattta 79  Q
    ||||||||||| ||||| |||||||||||| | || |||||||||||||||||||||||    
6612995 tttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaattta 6613053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 6612124 - 6612199
Alignment:
296 atagcaagatgttcttgatattaatattgtactaaacaagtcct---ttaagtttatt--tttatccatctcttaaa 367  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |   |||||||||||  ||| |||||||||||||    
6612124 atagcaagatgttcttgatatt-atattgtaccaaacaagtctttaattaagtttatttgtttttccatctcttaaa 6612199  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 6746170 - 6746207
Alignment:
107 tgtcaaaaccattttgattccaaaccactcacttcaat 144  Q
    ||||| ||||||||||||||||||||| ||||||||||    
6746170 tgtcacaaccattttgattccaaaccagtcacttcaat 6746207  T

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Target: scaffold0470 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 2396 - 2492
Alignment:
81 ggtaaatttaaagaaatcacggattttgtcaaaaccattttgattccaaaccactcacttcaatgctatcaatttgcactatgtagggccttccatc 177  Q
    |||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
2396 ggtaaattaaaaaaaatcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctatgaatttgcactatgtaggtccttccatc 2492  T

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Target: scaffold0470; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 2539 - 2625
Alignment:
192 tatagtactccacttgtttggaaaggaaaaggtccctctt--gataatgatagatgttcacaaataagatgcagttagttttgacaaatcaa 281  Q
    ||||||||||||||||||||||||     |||||||||||  ||||||||||||||||||||||| ||||| ||| ||  ||||||||||||    
2539 tatagtactccacttgtttggaaa-----aggtccctcttttgataatgatagatgttcacaaattagatgtagtcagggttgacaaatcaa 2625  T

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Target: scaffold0470; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 2283 - 2341
Alignment:
21 tttcactaccataaaacctaaaacactatcccataaaattaagtgtgtatttaaattta 79  Q
    ||||||||||| ||||| |||||||||||| | || |||||||||||||||||||||||    
2283 tttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaattta 2341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 1412 - 1487
Alignment:
296 atagcaagatgttcttgatattaatattgtactaaacaagtcct---ttaagtttatt--tttatccatctcttaaa 367  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |   |||||||||||  ||| |||||||||||||    
1412 atagcaagatgttcttgatatt-atattgtaccaaacaagtctttaattaagtttatttgtttttccatctcttaaa 1487  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 539 - 582
Target Start/End: Complemental strand, 50781852 - 50781809
Alignment:
539 ccccataaaaattgcacaacaattttaaggatgatatgaatggt 582  Q
    ||||| |||||||||||| || ||||||||||||||||||||||    
50781852 ccccacaaaaattgcacatcagttttaaggatgatatgaatggt 50781809  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 32980460 - 32980415
Alignment:
537 atccccataaaaattgcacaacaattttaaggatgatatgaatggt 582  Q
    ||||||| |||||| |||||||||||||| ||||| ||||||||||    
32980460 atccccacaaaaatcgcacaacaattttagggatggtatgaatggt 32980415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 3754001 - 3753945
Alignment:
508 atacgaaggtcactattaaccatcgtatcatccccataaaaattgcacaacaatttt 564  Q
    |||||||||||  | || |||||| ||||||||| |||||| |||||||||||||||    
3754001 atacgaaggtctttgttgaccatcatatcatcccaataaaatttgcacaacaatttt 3753945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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