View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7402_low_4 (Length: 516)
Name: NF7402_low_4
Description: NF7402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7402_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 40629989 - 40630181
Alignment:
| Q |
17 |
ataattgacaaatgacaagaacaaccacttgataaaacatgtcggtccaaataataaaacagtccacaaatcatatggacgtagttttgtttcatgtaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40629989 |
ataattgacaaatgacaagaacaaccacttgataaaacatgtcggtccaactaataaaacagtccacaaatcatatggacgtagttttgtttcatgtaat |
40630088 |
T |
|
| Q |
117 |
atgaatttctactttttgcactttttgttaatggacggagatatttgtgggtggtgtctgtatattataccaattataccagtactgctactt |
209 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40630089 |
atgaatttctactgtttgcactttttgttaatggacggagatatttgtgggtggtgtctgtatattataccaattataccaatactgctactt |
40630181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 372 - 515
Target Start/End: Original strand, 40630385 - 40630527
Alignment:
| Q |
372 |
gtgacgatattgatgtatgtacgacgctggcaacagaactacttcaataagacaggaaaccttaaagtattgctctgtcaggcattaacaagtcactttt |
471 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40630385 |
gtgacgatattgatgtatgtacgaagctggcaacagaactacttcaataagacaggaaaccttaa-gtattgctctgtcaggcattaacaagtcactttt |
40630483 |
T |
|
| Q |
472 |
aaaattatgtcttcccattgatttccactatttcctaatcatat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40630484 |
aaaattatgtcttcccattgatttccactatttcctaatcatat |
40630527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 40630208 - 40630320
Alignment:
| Q |
195 |
ccagtactgctacttggtaagtaacatttctatcatattaataacacagtctacaaatcaaataatttggaacatttggctttttcattaatgagatggc |
294 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40630208 |
ccagtactgctacttgctaaataacatttctatcatattaataacacagtctacaaatcaaataatttggaacatttggctttttcattaatgagatggc |
40630307 |
T |
|
| Q |
295 |
atgacattttgtg |
307 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40630308 |
atgacattttgtg |
40630320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 40646018 - 40645982
Alignment:
| Q |
438 |
gtattgctctgtcaggcattaacaagtcacttttaaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40646018 |
gtattgctctgtcaggcattaacaagtcacttttaaa |
40645982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University