View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7402_low_5 (Length: 497)
Name: NF7402_low_5
Description: NF7402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7402_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 24321070 - 24320795
Alignment:
| Q |
16 |
atagatatgaaacaataagtgctaattagagatgtcttgagtccaattattgacaatatcagcaaaatgatcctcatgcaaattttctcagaaaaagagc |
115 |
Q |
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| T |
24321070 |
atagatatgaaacaataagtgctaattagagatgtcttgagtccaattattgacaatatcagcaaaatgatcctcatgcaaattttctcagaaaaagagc |
24320971 |
T |
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| Q |
116 |
agtttacatcatctttgatatgactacagaaaccaacagtaaatttttatgatt----ttacatattggtaatgatcatagaattaaaacaagtcataat |
211 |
Q |
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| T |
24320970 |
agtttacatcatctttgatatgactacggaaaccaacagtaaatttttatgattttacttacatattggtaatgatcatagaattaaaacaagtcataat |
24320871 |
T |
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| Q |
212 |
gaaaaaacttttcgctatatttaatgcatgtgcaagagtagtggagtttcttttttcttgtgattccatcatataa |
287 |
Q |
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| T |
24320870 |
gaaaaaacttttcgctatatttaatgcatgtgcaagagtagtggagtttcttttttcttgtgattccatcatataa |
24320795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 258 - 474
Target Start/End: Complemental strand, 24320775 - 24320560
Alignment:
| Q |
258 |
tttcttttttcttgtgattccatcatataagtataacccacatgttgctttgacactataggcaaattctatattatatcactt-----tgataggtgca |
352 |
Q |
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| T |
24320775 |
tttcttttttcttgtgattccatcatataa------cccacatgttgctttgacactataggcaaattctatattatatcacttagctttgataggtgca |
24320682 |
T |
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| Q |
353 |
tgggagtgccgtatacttggctcgtacctaaaaatcgactgaaaccttgttaacaccaaacatatatttatcttttgaaagtagaagatcatagttctca |
452 |
Q |
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| T |
24320681 |
tgggagtgccgtatacttggctcgtacctaaaaatcgactgaaaccttgttaacaccaaacatatatttatcttttgaaagtagaagatcgtagttctca |
24320582 |
T |
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| Q |
453 |
gttttcccagttgagaggtgat |
474 |
Q |
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| T |
24320581 |
gttttcccagttgagaggtgat |
24320560 |
T |
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