View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7403_high_1 (Length: 491)
Name: NF7403_high_1
Description: NF7403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7403_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 27773058 - 27773457
Alignment:
| Q |
18 |
atgtatgcagtacatttattgttgaaatatataaaatcatagcctaagaatatcctgcgtgagtattttggcgtggttttgtgaccggatctaatgctcc |
117 |
Q |
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| T |
27773058 |
atgtatgcagtacatttattgttgaaatatataaaatcatagcctaagaatatcctgcgtgagtattttggcgtggttttgtgaccggatctaatgctcc |
27773157 |
T |
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| Q |
118 |
aaggagccgtatcataacgagaatctatcccccaagttattggtaaagagaacaagtgacacacctattgggaaaatagggtaatgcattttaaggtgca |
217 |
Q |
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| T |
27773158 |
aaggagccgtatcataacgagaatctatcccccaa-----------agagaacaagtgacacacctattaggaaaatagggtaatgcattttaaggtgca |
27773246 |
T |
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| Q |
218 |
tgcataggcatgattctagcagacttcttacgggagctgcaagtagcaactctgatagaagcttcagagctaaannnnnnnatggagtttagtccatgtt |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
27773247 |
tgcataggcatgattctagcagacttcttatgggagctgcaagtagcaactctaatagaagcttcagagctaaaaaattttatggagtttagtccatgtt |
27773346 |
T |
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| Q |
318 |
gccttcttactgtagtttgaattcctgtgatttcatttcttacaggttttcaagagtgggacgcttttcttatcttccaaaggtgtgtttaactactcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27773347 |
gccttcttactgtagtttgaattcctgtgatttcatttcttacaggttttcaagtgtgggacgcttttcttatcttccaaaggtgtgtttaactactcta |
27773446 |
T |
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