View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7403_high_4 (Length: 242)
Name: NF7403_high_4
Description: NF7403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7403_high_4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10642973 - 10642739
Alignment:
| Q |
1 |
gacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtaca |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10642973 |
gacccaaacagagaaggatacacggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatcgtaca |
10642874 |
T |
|
| Q |
101 |
taaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctacctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642873 |
taaaagcaatcacacaactaagaaggatacacacaag-------cacaagacacacgtggcccataccagaaatcatgttatcctcactaagcctacctt |
10642781 |
T |
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| Q |
201 |
acatctcatttaaaaggatcaaactaacttagtttttacccc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642780 |
acatctcatttaaaaggatcaaactaacttagtttttacccc |
10642739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 32712865 - 32713099
Alignment:
| Q |
1 |
gacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtaca |
100 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712865 |
gacccaaacagagaaggagacacagttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtaca |
32712964 |
T |
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| Q |
101 |
taaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctacctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712965 |
taaaagcaatcacacaactaagaaggatacacaca-------agcacaagacacacgtagcccataccagaaatcatgttatcctcactaagcctacctt |
32713057 |
T |
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| Q |
201 |
acatctcatttaaaaggatcaaactaacttagtttttacccc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
32713058 |
acatctcatttaaaaggatcaaactaacttagtttttacccc |
32713099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 23923676 - 23923910
Alignment:
| Q |
1 |
gacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23923676 |
gacccaaacagagaaggatacatggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaatagacttataatacaaaaatagtaca |
23923775 |
T |
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| Q |
101 |
taaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctacctt |
200 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923776 |
taaaagcaaccacacaactaagaaggatacacaca-------aacacaagacacacgtggcccataccagaaatcatgttatcctcactaagcctacctt |
23923868 |
T |
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| Q |
201 |
acatctcatttaaaaggatcaaactaacttagtttttacccc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923869 |
acatctcatttaaaaggatcaaactaacttagtttttacccc |
23923910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3547 - 3462
Alignment:
| Q |
1 |
gacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataat |
86 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3547 |
gacccaaacagagaaggatacacggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttctaat |
3462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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