View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7403_low_6 (Length: 204)
Name: NF7403_low_6
Description: NF7403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7403_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 4661755 - 4661585
Alignment:
| Q |
19 |
ccatgtaatgaccatccatataaagagctgcactctgtggatgcagtccatccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcct |
118 |
Q |
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| T |
4661755 |
ccatgtaatgaccatccatataaagagctgcactctgtggatgcagtccatccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcct |
4661656 |
T |
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| Q |
119 |
ttgatttatgaaccagttatttatttgcttctggtccaaacctgttgactcagccaatgctaccttctctg |
189 |
Q |
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| T |
4661655 |
ttgatttatgaaccagttatttatttgcttctggtccaaacctgttgactcagccaatgctaccttctctg |
4661585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 37489242 - 37489300
Alignment:
| Q |
90 |
tcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
148 |
Q |
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| T |
37489242 |
tcttcagatggtttccagtgtcttttcctctgattgatgaaccaattatttatctgctt |
37489300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 8791891 - 8791989
Alignment:
| Q |
68 |
atccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgcttctggtccaaacctgttga |
166 |
Q |
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| T |
8791891 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctttgattaataaaccagttgtttatttgcttctgatcaagacctgttga |
8791989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 8780396 - 8780481
Alignment:
| Q |
68 |
atccatcaccataaactgcatgtcttctgatggtttccagtgcctcttcctttgattt--atgaaccagttatttatttgcttctg |
151 |
Q |
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| T |
8780396 |
atccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgattttaataaaccagttgtttatttgcttctg |
8780481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 48282094 - 48282138
Alignment:
| Q |
104 |
ccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
148 |
Q |
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| T |
48282094 |
ccagttccttttcctttgattaataaaccagttatttatttgctt |
48282138 |
T |
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