View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7404_low_1 (Length: 703)
Name: NF7404_low_1
Description: NF7404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7404_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 180 - 692
Target Start/End: Original strand, 26425106 - 26425625
Alignment:
| Q |
180 |
tccatttattttgcattcaaaacatcatgattcacataactcattgccatgtatcttatagcataatttataacctgctgc-------cacgactgttgt |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26425106 |
tccatttattttgcattcaaaacatcatgattcacataactcgttgccatgtatcttatagcataatttataacctgctgccacctgccacgactgttgt |
26425205 |
T |
|
| Q |
273 |
ggtctctcaaagcccgtacaatgctcctccttattcctccacaaacataatagcgctaattccatccaaaacatccactggaaaccaatctttcaaaatc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26425206 |
ggtctctcaaagcccgtacaatgctcctccttattcctccacaaacataatagcgctaattccatccaaaacatccactggaaactaatctttcaaaatc |
26425305 |
T |
|
| Q |
373 |
tcttcattccattgaccatttgtatccaccaactcagacaccatgacattcctcaaacatccaaatttgcaattttaaaaccacaatccacccaacattg |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26425306 |
tcttcattccattgaccatttgtatccaccaactcagacaccatgacattcctcaaacatccaaatttacaattttaaaaccacaatccacccaacattg |
26425405 |
T |
|
| Q |
473 |
cttccatgcgtgaatactttgtccatactcaaaatccttcaacttaggccaaagcttagttaaatttttccataagcataaatcattagacttagctatg |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26425406 |
tttccatgcgtgaatactttgtccatactcaaaatccttcaacttaggccaaagcttagttaaatttttccataagcataaatcattagacttagctatg |
26425505 |
T |
|
| Q |
573 |
acattatcaagatcatgggtaacattacggcaatacttaccttgcataacatcacaccataaagccttctcaccacacaaaatcttccatcttattttaa |
672 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26425506 |
acattatcaagatcatgggtatcattacggcaatacttaccttgcataacatcacaccataaagccttctcaccacacaaaatcttccatcttattttca |
26425605 |
T |
|
| Q |
673 |
taaggcaaagcttggttcat |
692 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
26425606 |
taaggcaaagcttggttcat |
26425625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 26424986 - 26425063
Alignment:
| Q |
88 |
tctaattttttatatttatctttcaccaaataacattctccatttattttnnnnnnntaaataaatagaaaggatcct |
165 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26424986 |
tctaattttttatatttatctttcaccaaataacattctccatttattttaaaaaaataaataaatagaaaggatcct |
26425063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 26424780 - 26424846
Alignment:
| Q |
39 |
tatataagtaattaatagtggtgagacatacttagtgatatgactcc-tatctaattttttatattt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
26424780 |
tatataagtaattaatagtggtgagacatacttaatgatacgactccttatctaattttttatattt |
26424846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 41430588 - 41430715
Alignment:
| Q |
188 |
ttttgcattcaaaacatcatgattcacataactcattgccatgtatcttatagcataatttataacctgctgccacgactgttgtggtctctcaaagccc |
287 |
Q |
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||||||||||| | | | || ||| |||||||| ||| | ||||||| ||| ||||||||||||| ||||||||| ||| || ||||||| |||||| |
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| T |
41430588 |
ttttgcattcacatcgttatcattaacataactagttgtcttgtatctcataacataatttataacttgctgccacaactttttaggtctctaaaagcct |
41430687 |
T |
|
| Q |
288 |
gtacaatgctcctccttattcctccaca |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
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| T |
41430688 |
gtacaatgctcctctttattcctccaca |
41430715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 2883952 - 2883999
Alignment:
| Q |
90 |
taattttttatatttatctttcaccaaataacattctccatttatttt |
137 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||||||| |
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| T |
2883952 |
taattttttgtatatatctttcaccaaatgacattctccatttatttt |
2883999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 38856997 - 38857044
Alignment:
| Q |
90 |
taattttttatatttatctttcaccaaataacattctccatttatttt |
137 |
Q |
| |
|
||||||||| ||||||||| ||||||||| |||||||||||||||||| |
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| T |
38856997 |
taattttttttatttatctctcaccaaatgacattctccatttatttt |
38857044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 35963401 - 35963442
Alignment:
| Q |
85 |
ctatctaattttttatatttatctttcaccaaataacattct |
126 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
35963401 |
ctatctacttttttgtatttatctctcaccaaataacattct |
35963442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 28585015 - 28584963
Alignment:
| Q |
85 |
ctatctaattttttatatttatctttcaccaaataacattctccatttatttt |
137 |
Q |
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||||||| ||||| ||| ||||||||||||||| ||||||| |||||||||| |
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| T |
28585015 |
ctatctactttttggtatctatctttcaccaaatgacattcttcatttatttt |
28584963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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