View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7404_low_3 (Length: 412)
Name: NF7404_low_3
Description: NF7404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7404_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Complemental strand, 31403045 - 31402658
Alignment:
| Q |
8 |
atattattctcacataatttccaattaactctaaatatccttaacaagtataatttgatgtgcatgcacataaaactatttctactcataatttcaagaa |
107 |
Q |
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| T |
31403045 |
atattattctcacatgatttccaattaactctaaatatccttaacatatataatttgatgtgcatgcgcataaaactatttctactcataatttcaagaa |
31402946 |
T |
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| Q |
108 |
taaggctaagtaaatcaatatcttactagaaacccacctcattgtagcttccacttaatgccaaaatccccaaatcactgaatctccaataatcttatat |
207 |
Q |
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| T |
31402945 |
taaggctaagtaaatcaatatcttactagaaacccacctcattgtagcttccacttaatgccaaaatccccaaatcactgaatctccaaaaatcttatat |
31402846 |
T |
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| Q |
208 |
gttgtttcatgtttctagccttccttcaaagcttcttgtctcctttcaagcttccttattcttaatataaagttctttgtcagtccaattcgagcaatat |
307 |
Q |
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| T |
31402845 |
gttgtttcatgtttatagccttccttcaaagcttcttgtctcctttcaagcttccttattcttaatataaagttctttgtcagtccaattcgagcattat |
31402746 |
T |
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| Q |
308 |
accaaaattatagcatgaactttacatcataaattagtgcaaattttacaacacaaacagaaatttgtaactcattttcctaagtaat |
395 |
Q |
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| T |
31402745 |
accaaaattatagcatgaactttacatcataaattagtgcaaattttacaacacaaacagaaatttgtaactcaatttcctaagtaat |
31402658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 7105633 - 7105720
Alignment:
| Q |
160 |
acttaatgccaaaatccccaaatcactgaatctccaataa---tcttatatgttgtttcatgtttctagccttccttcaaagcttctt |
244 |
Q |
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| T |
7105633 |
acttgatgccaaaagccccaaaccactaaatctctaaaaaaaatcttgtaagttgtttcaagtttctagccttgcttcaaagcttctt |
7105720 |
T |
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