View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_high_13 (Length: 296)
Name: NF7405_high_13
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 55372975 - 55373249
Alignment:
| Q |
13 |
caaagtcaatatcttaaatgattgaattatgaaattaattaaactatatattattcttaatactatgtttgtttttacctgttttttagtatggtcattt |
112 |
Q |
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| T |
55372975 |
caaagtcaatatcttaaatgattgaattatgaaattaattaaactatatattattcttaatactatgtttgtttttacctgttttttagtatggtcattt |
55373074 |
T |
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| Q |
113 |
ggtgcattataaaagttgccttcacttaaaatggttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgag |
212 |
Q |
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| T |
55373075 |
ggtgcattataaaagttgccttcacttaaaatggttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgag |
55373174 |
T |
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| Q |
213 |
cataaccaaatcttaccctgcacattcatcaacaactcaatattttaatttatatatcatcaaagtcagtataat |
287 |
Q |
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| T |
55373175 |
cataaccaaatcttaccctgcacattcatcaacaactcaatattttaatttatatatcatcaaagtcaatataat |
55373249 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 8526154 - 8526248
Alignment:
| Q |
140 |
aaaatggttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgca |
234 |
Q |
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|||||||| |||| |||||| || || || |||||||| ||||| ||| ||| |||||| || ||||| ||||||||||||||||||||||| |
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| T |
8526154 |
aaaatggtagggtcagcactaccaccaatggcatacatgatccactcatcgtatcggttgtttacaacatgggcataaccaaatcttaccctgca |
8526248 |
T |
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