View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_high_15 (Length: 268)
Name: NF7405_high_15
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 2425940 - 2425697
Alignment:
| Q |
9 |
cataatactaatccacagagttcaaaattaaaagaaccatttttcttttccttcttaacattaatggaaacatttttctaatcagccatacatagtgg-c |
107 |
Q |
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| T |
2425940 |
cataattctaatccacagagttcaaaattaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatcagccatacatggtggcc |
2425841 |
T |
|
| Q |
108 |
tcccttttcttttctaattataggttggcaggacagcagaagagcaaggattnnnnnnntagtttagaacaaacttttaaaatgctagaaaatatttagt |
207 |
Q |
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| T |
2425840 |
ccccttttcttttctaattataggttggcaggacagcagaagagcaaggattaaaaaaatagtttagaacaaacttttaaaatgctagaaaatatttagt |
2425741 |
T |
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| Q |
208 |
ttttactttatttagtggacaatggacacaaaacaaattaatgt |
251 |
Q |
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| T |
2425740 |
ttttactttatttagtggacaatggacacaaaacaaactaatgt |
2425697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 2429163 - 2429063
Alignment:
| Q |
138 |
ggacagcagaagagcaaggattnnnnnnntagtttagaacaaacttttaaaatgctagaaaatatttagtttttactttatttagtggacaatggacaca |
237 |
Q |
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| T |
2429163 |
ggacagcaaaagagcaaggattaaaaaaatagtttaggacaaacttttaagatgctagaaaacattttgtttttactgtatttagtggacaatggacaca |
2429064 |
T |
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| Q |
238 |
a |
238 |
Q |
| |
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| |
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| T |
2429063 |
a |
2429063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 2647459 - 2647515
Alignment:
| Q |
36 |
ttaaaagaaccatttttcttttccttcttaacattaatggaaacatttttctaatca |
92 |
Q |
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| T |
2647459 |
ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctgatca |
2647515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 2603181 - 2603234
Alignment:
| Q |
36 |
ttaaaagaaccatttttcttttccttcttaacattaatggaaacatttttctaatca |
92 |
Q |
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| T |
2603181 |
ttaaaagaaccatttttctttt---tcttaacattaatggaaacatttttctgatca |
2603234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 2679906 - 2679958
Alignment:
| Q |
37 |
taaaagaaccatttttcttttccttcttaacattaatggaaacatttttctaatca |
92 |
Q |
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| T |
2679906 |
taaaagaaccatttttctttt---tcttaacattaatggaaacatttttctgatca |
2679958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 2429343 - 2429258
Alignment:
| Q |
39 |
aaagaaccatttttcttttccttcttaacattaatggaaacatttttctaatca--gccatacatagtggctcccttttcttttctaat |
125 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||| ||||||| |
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| T |
2429343 |
aaagaaccatttttctttt---tcttatcattaatggaaacatttttctgatcaccaccacccatagtggcccccttttctattctaat |
2429258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 2445764 - 2445716
Alignment:
| Q |
36 |
ttaaaagaaccatttttcttttccttcttaacattaatggaaacatttttct |
87 |
Q |
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| T |
2445764 |
ttaaaagaaccatttttctttt---tcttaacattaatagaaacatttttct |
2445716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 2575165 - 2575218
Alignment:
| Q |
36 |
ttaaaagaaccatttttcttttccttcttaacattaatggaaacatttttctaatca |
92 |
Q |
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|||||||||||||||||||||| ||||||||| |||| |||||||||||| |||| |
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| T |
2575165 |
ttaaaagaaccatttttctttttcttcttaac---aatgtaaacatttttctgatca |
2575218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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