View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7405_high_2 (Length: 581)
Name: NF7405_high_2
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 1349852 - 1349291
Alignment:
| Q |
1 |
acataaatgcatatcaaaactagaatcaaatatgcatatttcttgcttatttcaccatgatcaccaagttgtgctgccattatacttcctattagaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1349852 |
acataaatgcatatcaaaactagaatcaagtatgcatatttcttgcttatttcaccatgatcaccaagttgtgctgccattatacttcctattagaattt |
1349753 |
T |
|
| Q |
101 |
gtgagaagaacatttgaattccacctgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatgaatgttgaagtagtacctacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1349752 |
gtgagaagaacatttgaattccacctgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatgaatgttgaagtagtacctacaat |
1349653 |
T |
|
| Q |
201 |
ccctaccataactgcagataaaagtgaagcactttcacctaatccaatggttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1349652 |
ccctaccataactgcagataaaagtgaagcactttcacctaatccaatggttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaat |
1349553 |
T |
|
| Q |
301 |
tgttggaaaaaaggtatagctattgccataacaagttgaggtctatattttctttgtaagatattcttaaatggatgtttgatagaatttgacatgatac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1349552 |
tgttggaaaaaaggtatagctattgccataacaagttgaggtctatattttctttgtaagatattcttaaatggatgtttgatagaatttgacatgatac |
1349453 |
T |
|
| Q |
401 |
ttgcttcaataaggtcctcaaattcttgttgaacatcatgtgtgcctcttatggattgcagcattaacttagctttttgatggtttttgctgttttggat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1349452 |
ttgcttcaataaggtcctcaaattcttgttgaacatcatgtgtgcctcttattgattgcagcattaacttagctttttgatggtttttgctgttttgaat |
1349353 |
T |
|
| Q |
501 |
tatgctgtttggtgtttctgggaggaaaaatgctcctaaagtgaggattgtagctggaactg |
562 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1349352 |
tatgctgtttggtgtttctggaaggaaaaatgctcctaaagtgaggattgtagctggaactg |
1349291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 151 - 355
Target Start/End: Complemental strand, 1356659 - 1356455
Alignment:
| Q |
151 |
agtttatcaactatgagcattgatatgaatgttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatgg |
250 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||| ||||||||| || ||| ||| || | |||| ||| || |||||||| ||||| ||||| | |
|
|
| T |
1356659 |
agtttatctactatgaacattgatatgaacgttgaaccagtacctactatgcctgtcatgacagatgatagaagcgatgcactttctcctaacccaattg |
1356560 |
T |
|
| Q |
251 |
ttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattt |
350 |
Q |
| |
|
|| || || | || ||||| || | ||||||||||| ||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
1356559 |
ttctgaaaagtaaaggggcatagaaagcgatgacattgatccctgtcacttgttggaaaaatggtattgctattgccattacaagttgaggtctatatct |
1356460 |
T |
|
| Q |
351 |
tcttt |
355 |
Q |
| |
|
||||| |
|
|
| T |
1356459 |
tcttt |
1356455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University