View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_high_3 (Length: 576)
Name: NF7405_high_3
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Complemental strand, 48618403 - 48617862
Alignment:
| Q |
13 |
aatatggatgaggcttgtcccaacacatggtcattttaattatactcgattttatctttctaatgaagtttactttcttgtaaaaa-gaaagttgaagaa |
111 |
Q |
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| T |
48618403 |
aatatggatgaggcttgtcccaacacatggtcattttaattatactcgattttatctttcgaatgaagtttactttcttgtaaaaaagaaagttgaagaa |
48618304 |
T |
|
| Q |
112 |
ctccacttatattatgactacttactatttttcatgcaggctggtttcaactcgaaaaaagcagtcgctactttttgactttaattaggataatcaatca |
211 |
Q |
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| T |
48618303 |
ctccccttatattatgactacttactatttttcatgcaggctggtttcaactcgaaaaaagcagtcgctactttttgactttaattaggataatcaatca |
48618204 |
T |
|
| Q |
212 |
ttgtgtggtgtgggatcatcatctaattgataaacagggggtagggcgtgcctaatgctatgtagtattgtggggaacccacaattaattaagcagaaaa |
311 |
Q |
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| T |
48618203 |
ttgtgtgg-----gatcatcatctaattgataaacagggggtagggcgtgcctaatgctatgtagtattgtggggaacccacaattaattaagcagaaaa |
48618109 |
T |
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| Q |
312 |
ctgaagtttgtttaaccatt-attaattggatattcattaattaattcttcagtttttagctataatatataaagaggaattggcatgaatattgaaatg |
410 |
Q |
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| T |
48618108 |
ctgaagtttgtttaattatttattaattggatattcattaattaattcttcagtttttagctataatatataaagaggaa--ggcatgaatattgaaatg |
48618011 |
T |
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| Q |
411 |
agcatgaagatggggtgtaccagcaatttgaagaacgctgtgatagcattcttggctcctcttccctccattctcttctacctctcattcattaataatg |
510 |
Q |
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| T |
48618010 |
agcatgaagatggggtgtaccagcaatttgaagaacgctgtgatagcattcttggctcctcttccctccattatcttctacctctcattcattaataatg |
48617911 |
T |
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| Q |
511 |
caactgatcacccattctgctatcgccaccccctcctattagtcaatct |
559 |
Q |
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| T |
48617910 |
caactgatcacccattctgctatcgccaccccctcctattagtcaatct |
48617862 |
T |
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