View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_high_5 (Length: 516)
Name: NF7405_high_5
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 4795609 - 4795937
Alignment:
| Q |
18 |
cagttgatccatgaagttggtttcgtcatcgacggctgttaggcagtgaagtccaaggcatccattattctgtgatgctgctgagatatgttgatgaggt |
117 |
Q |
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| T |
4795609 |
cagttgatccatgaagttggtttcgtcatcgacggctgttaggcagtgaagtccaaggcatccattattctgtgatgctgctgagctatgttgatgaggt |
4795708 |
T |
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| Q |
118 |
tgaaaaaataaagttaccattaatgctgttacaaccaaagaaattaatgatcctttcattgtactgttggagctaatatcgaactcttgctagtttataa |
217 |
Q |
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| T |
4795709 |
tgaaaaaataaagttaccattaatgctgttacaaccaaagaaattaatgatcctttcattgtactgttggagcaaatatcgaactcttgctagtttataa |
4795808 |
T |
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| Q |
218 |
gattgtgcagatatttaattgaatatattgtgaagattattatagataaagataagaagatatcaagatatggggatgaggaacgtttgtttatctataa |
317 |
Q |
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| T |
4795809 |
gattgtgcagatgtttaattgaatatagtgtgaagattattatagataaagataagaagatatcaagatatggggatgaggaacgtttgtttatctataa |
4795908 |
T |
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| Q |
318 |
tataactgttacatattcatttgttttct |
346 |
Q |
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| T |
4795909 |
tataactgttacatatttatttgttttct |
4795937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 369 - 484
Target Start/End: Complemental strand, 39634940 - 39634824
Alignment:
| Q |
369 |
aagtacttgtttggttgtgcggtgggaagctgcaaacgtgaatctagccatcctaaaagtgatcctactaaaaaa-ttggtgtttggatagctattttta |
467 |
Q |
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| T |
39634940 |
aagtactcgtttggttatgcggtggggaactgcaaacgtgagtttaaccatcctaaaagtgaatctgctaaaaaaattggtgtttgggtagccattttta |
39634841 |
T |
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| Q |
468 |
aaattgaatttgacacc |
484 |
Q |
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| T |
39634840 |
aaattgagtttgacacc |
39634824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 476
Target Start/End: Complemental strand, 37887471 - 37887433
Alignment:
| Q |
438 |
aaaaaattggtgtttggatagctatttttaaaattgaat |
476 |
Q |
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| T |
37887471 |
aaaaaattggtgtttggataactatttttaaaattgaat |
37887433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 4679793 - 4679830
Alignment:
| Q |
85 |
ttctgtgatgctgctgagatatgttgatgaggttgaaa |
122 |
Q |
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| T |
4679793 |
ttctgtggtgctgctgagatatgttgatgtggttgaaa |
4679830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 369 - 481
Target Start/End: Complemental strand, 2484698 - 2484585
Alignment:
| Q |
369 |
aagtacttgtttggttgtgcggtgggaagctgcaaacgtgaatctagccatcctaaaagtgatcctact-aaaaaattggtgtttggatagctattttta |
467 |
Q |
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| T |
2484698 |
aagtactcgtttggttatgcggtggagaactgcaaacgtgagtctagccatcctaaaagtgaatctgctaaaaaaattggtgtttgggtagctattttta |
2484599 |
T |
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| Q |
468 |
aaattgaatttgac |
481 |
Q |
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| T |
2484598 |
aaattgagtttgac |
2484585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Complemental strand, 3748304 - 3748268
Alignment:
| Q |
438 |
aaaaaattggtgtttggatagctatttttaaaattga |
474 |
Q |
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| T |
3748304 |
aaaaaattggtgtttgggtaactatttttaaaattga |
3748268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 474
Target Start/End: Complemental strand, 3619848 - 3619751
Alignment:
| Q |
377 |
gtttggttgtgcggtgggaagctgcaaacgtgaatctagccatcctaaaagtgatcctactaaaaaattggtgtttggatagctatttttaaaattga |
474 |
Q |
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| T |
3619848 |
gtttggttgcgtggtggggagctgtaaacgtgagtttaaatatcttaaaagtgagtttgctaaaaaattggtgtttgggtagccatttttaaaattga |
3619751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 37699122 - 37699085
Alignment:
| Q |
437 |
taaaaaattggtgtttggatagctatttttaaaattga |
474 |
Q |
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| T |
37699122 |
taaaaaattggtgtttggataactatttttaaaattga |
37699085 |
T |
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