View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_low_10 (Length: 425)
Name: NF7405_low_10
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_low_10 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 31192820 - 31192430
Alignment:
| Q |
20 |
ggaaagggaaaattagaggagttttaaaacaattgccttgtaatgggatattttgtaatgttttcatttttgagtcatgtaattcactacaaaggcatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31192820 |
ggaaagggaaaattagaggagttttaaaacaattgcctcgttatgggatattttgtaatgttttcatttttgagtcatgtaattcactgcaaaggcatga |
31192721 |
T |
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| Q |
120 |
aaattgacaaagaaaagcatctcattaagaattgagaatacaataaatgaagattcgacggtatctaaagacattacagagtggagaaattatattccaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31192720 |
aaattgacaaagaaaagcatctcattaagaattgagaatacaatgaatgaagattcgagggtatctaaagacattacagagtggagaaattatattccaa |
31192621 |
T |
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| Q |
220 |
gtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagcatgatct |
319 |
Q |
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| T |
31192620 |
gtcccatgataagtttc-aatgaagaaagcactctaaaagaccaagaaaaaaggcaaaaaagattttggaagaaggtgccgtgcaacccaagcatgatct |
31192522 |
T |
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| Q |
320 |
tgtgcaccctggatgtgcaaaacaatgcacaaaatgtactgtttttgacttgatgtgtggcgctcatgatgctacgcgcaacgtgtgttctt |
411 |
Q |
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| T |
31192521 |
tgtccaccctggatgtgcaaaacagtgcacaaaatgtactgtttttgatttgatgtgtggcgctcatgatgccacgcgcaatgtgtgttctt |
31192430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 273
Target Start/End: Complemental strand, 16764 - 16675
Alignment:
| Q |
183 |
tctaaagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggc |
273 |
Q |
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| T |
16764 |
tctaaagacattacaaagagaagaaattatattctgagtcccaagacaagtttc-aatgaagaaaacactcaaaaagatgaagaaaaaggc |
16675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 20314372 - 20314510
Alignment:
| Q |
214 |
ttccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagca |
313 |
Q |
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|||||||||||| ||||| ||||||| |||||||| |||| |||||| ||||||||| || | | ||||||||||||||| |||| || |||| |
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| T |
20314372 |
ttccaagtcccaagacaaatttcaaa-gaagaaagtactcaaaaagaccaagaaaaaagcaaaaaatg-tgttggaagaaggtgccatgcactccgagca |
20314469 |
T |
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| Q |
314 |
tgatcttgtgcaccctggatgtgcaaaacaatgcacaaaat |
354 |
Q |
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| T |
20314470 |
tgactctgtgcgccctggttgtgcaaaacaatgcacaaaat |
20314510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 17380814 - 17380764
Alignment:
| Q |
187 |
aagacattacagagtggagaaattatattccaagtcccatgacaagtttca |
237 |
Q |
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| T |
17380814 |
aagacattacaaagaggagaaattctatttcaagtcccaagacaagtttca |
17380764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 19084149 - 19084220
Alignment:
| Q |
187 |
aagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaag |
259 |
Q |
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| T |
19084149 |
aagacattacaaagtggagaactactattccaagtgccaagacaagtttc-aaggaagaaagcattcaaaaag |
19084220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 2980671 - 2980710
Alignment:
| Q |
63 |
tgggatattttgtaatgttttcatttttgagtcatgtaatt |
103 |
Q |
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| T |
2980671 |
tgggatattttgtaatgttttc-tttttgagtcatgtaatt |
2980710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 8323174 - 8323222
Alignment:
| Q |
187 |
aagacattacagagtggagaaattatattccaagtcccatgacaagttt |
235 |
Q |
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||||||||| | |||||||||||| |||| ||||||||| ||||||||| |
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| T |
8323174 |
aagacattagaaagtggagaaattctatttcaagtcccaagacaagttt |
8323222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 12656527 - 12656580
Alignment:
| Q |
182 |
atctaaagacattacagagtggagaaattatattccaagtcccatgacaagttt |
235 |
Q |
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|||| ||||||||||| | |||||||||||||||||||| | || ||||||||| |
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| T |
12656527 |
atctgaagacattacaaaatggagaaattatattccaagccacaagacaagttt |
12656580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 23738157 - 23738108
Alignment:
| Q |
187 |
aagacattacagagtggagaaattatattccaagtcccatgacaagtttc |
236 |
Q |
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|||| |||||| |||||||||||| |||||| ||||||| |||||||||| |
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| T |
23738157 |
aagatattacaaagtggagaaattctattccgagtcccaagacaagtttc |
23738108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 9789136 - 9789184
Alignment:
| Q |
187 |
aagacattacagagtggagaaattatattccaagtcccatgacaagttt |
235 |
Q |
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| T |
9789136 |
aagacattacaagttggagaaattctattccaagtcccaagacaagttt |
9789184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 21448760 - 21448799
Alignment:
| Q |
64 |
gggatattttgtaatgttttcatttttgagtcatgtaattc |
104 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||| |
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| T |
21448760 |
gggacattttgtaatgttttca-ttttgagtcatgtaattc |
21448799 |
T |
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