View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7405_low_13 (Length: 371)

Name: NF7405_low_13
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7405_low_13
NF7405_low_13
[»] scaffold0016 (3 HSPs)
scaffold0016 (4-280)||(53813-54087)
scaffold0016 (276-354)||(51212-51290)
scaffold0016 (17-66)||(37607-37656)
[»] scaffold0642 (3 HSPs)
scaffold0642 (276-354)||(6663-6741)
scaffold0642 (178-241)||(4102-4165)
scaffold0642 (236-280)||(4184-4228)
[»] scaffold0345 (3 HSPs)
scaffold0345 (276-354)||(16576-16654)
scaffold0345 (178-241)||(14014-14077)
scaffold0345 (236-280)||(14096-14140)
[»] scaffold0105 (3 HSPs)
scaffold0105 (276-354)||(22328-22406)
scaffold0105 (178-241)||(24904-24967)
scaffold0105 (236-280)||(24841-24885)
[»] chr4 (4 HSPs)
chr4 (276-354)||(15708819-15708897)
chr4 (178-241)||(15707358-15707421)
chr4 (276-354)||(26795899-26795981)
chr4 (236-280)||(15707440-15707484)
[»] chr2 (3 HSPs)
chr2 (276-354)||(3380883-3380961)
chr2 (178-233)||(3378229-3378284)
chr2 (236-280)||(3378316-3378360)
[»] scaffold1526 (2 HSPs)
scaffold1526 (178-233)||(1249-1304)
scaffold1526 (236-280)||(1173-1217)
[»] chr8 (4 HSPs)
chr8 (178-241)||(44495504-44495567)
chr8 (312-354)||(44498316-44498358)
chr8 (276-314)||(44498151-44498189)
chr8 (239-280)||(44495589-44495630)
[»] chr6 (5 HSPs)
chr6 (17-86)||(21140128-21140194)
chr6 (93-177)||(21221835-21221922)
chr6 (17-68)||(21221708-21221759)
chr6 (18-66)||(21245957-21246005)
chr6 (17-66)||(21200690-21200739)


Alignment Details
Target: scaffold0016 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 54087 - 53813
Alignment:
Q  4 actttggtgttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaagtcttagtaaatgagtactgaccaaatt 103  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  54087 actttgggcttcattgcttagaataaatgttatttagtacaaaatgtctgagatgaaattgaatatta--aagtcttagtaaatgagtactgacaaaatt 53990  T
Q  104 accaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctctctaacatcattcca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53989 accaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctctctaacatcattcca 53890  T
Q  204 atccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53889 atccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcgttctt 53813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 51290 - 51212
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51290 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 51212  T

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Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 37656 - 37607
Alignment:
Q  17 ttgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 66  Q
    ||||||||||||| |||||||||| ||||||| |||  ||||||||||||    
T  37656 ttgcatagaataattgttatttagaacaaaatttctacgatgaaattgaa 37607  T

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Target: scaffold0642 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 6663 - 6741
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6663 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 6741  T

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Target: scaffold0642; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

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Target: scaffold0642; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 4184 - 4228
Alignment:
Q  236 acccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttctt 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 16576 - 16654
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 16654  T

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Target: scaffold0345; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

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Target: scaffold0345; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 14096 - 14140
Alignment:
Q  236 acccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttctt 14140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 22406 - 22328
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22406 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 22328  T

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Target: scaffold0105; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

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Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
Q  236 acccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttctt 24841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 15708819 - 15708897
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15708819 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 15708897  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 26795981 - 26795899
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaagg----aaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||| |||||||||  |||||| |||| |||||||||    ||||| |||||| |||||||||    
T  26795981 ttcttttatgcccatcacatagagtatatagtatggtaccactctacaaccaaaaggttgtaaactaataaaaagatgatctt 26795899  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
Q  236 acccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttctt 15707484  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 3380883 - 3380961
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3380883 ttcttttatgcccatcacatagaggatatagtataataccaccctacgaccaaaaggaaactcataaaaggatgatctt 3380961  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
Q  236 acccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttctt 3378360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
Q  236 acccatccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttctt 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  178 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 241  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 44498316 - 44498358
Alignment:
Q  312 taccaccctacgaccaaaaggaaactcataaaaggatgatctt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44498316 taccaccctacgaccaaaaggaaactcataaaaggatgatctt 44498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 44498151 - 44498189
Alignment:
Q  276 ttcttttatgcccatcacatagaggatatagtataatac 314  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44498151 ttcttttatgcccatcacatagaggatatagtataatac 44498189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
Q  239 catccatgaattcactctagagcggtgagtggcttcgttctt 280  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttctt 44495630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 21140128 - 21140194
Alignment:
Q  17 ttgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaagtcttagtaaa 86  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||   ||||||||||||||    
T  21140128 ttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaatat---taagtcttagtaaa 21140194  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  93 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 177  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 21221708 - 21221759
Alignment:
Q  17 ttgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaata 68  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21221708 ttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaata 21221759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 21246005 - 21245957
Alignment:
Q  18 tgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 66  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||||||    
T  21246005 tgcatagaataattgttatttataacaaaatgtatgagatgaaattgaa 21245957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 21200690 - 21200739
Alignment:
Q  17 ttgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 66  Q
    ||||||| | ||| |||||||||| ||||||||||| |||||||||||||    
T  21200690 ttgcataaagtaattgttatttagaacaaaatgtctaagatgaaattgaa 21200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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