View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7405_low_15 (Length: 324)

Name: NF7405_low_15
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7405_low_15
NF7405_low_15
[»] chr2 (3 HSPs)
chr2 (19-136)||(33698648-33698765)
chr2 (19-136)||(33681591-33681708)
chr2 (206-313)||(33362831-33362938)
[»] chr6 (2 HSPs)
chr6 (21-136)||(14087932-14088047)
chr6 (19-136)||(14092462-14092579)
[»] chr1 (3 HSPs)
chr1 (22-136)||(46461308-46461422)
chr1 (19-136)||(46453907-46454024)
chr1 (206-313)||(41452829-41452936)
[»] chr8 (2 HSPs)
chr8 (19-136)||(24876690-24876807)
chr8 (19-136)||(24881175-24881292)
[»] chr7 (4 HSPs)
chr7 (19-136)||(9950119-9950236)
chr7 (21-138)||(9955106-9955223)
chr7 (19-136)||(32213726-32213837)
chr7 (19-85)||(32213147-32213213)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 33698765 - 33698648
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698765 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 33698666  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  33698665 tagattattccatattta 33698648  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 33681708 - 33681591
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33681708 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattccttttcattattctttgcactttccatctt 33681609  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  33681608 tagattattccatattta 33681591  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 33362938 - 33362831
Alignment:
Q  206 tggattcaccaagcgcgttctcaggagtgacatctatattatgagaactcttaaacgaagggtttcctgattctatgccctgaggatgcaatgatccatg 305  Q
    |||||||||||| |  || |||||||||| |||  ||||||||||||||||||||| | |||||||||||||| |||||| || ||| | |||||||||     
T  33362938 tggattcaccaaacaagtgctcaggagtggcattgatattatgagaactcttaaaccatgggtttcctgattccatgcccagaagatacgatgatccatt 33362839  T
Q  306 atgtccat 313  Q
    ||||||||    
T  33362838 atgtccat 33362831  T

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Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 14087932 - 14088047
Alignment:
Q  21 ttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatcttta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087932 ttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatcttta 14088031  T
Q  121 gattattccatattta 136  Q
    ||||||||||||||||    
T  14088032 gattattccatattta 14088047  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 14092462 - 14092579
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14092462 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcattttccatctt 14092561  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  14092562 tagattattccatattta 14092579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 46461422 - 46461308
Alignment:
Q  22 tcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctttag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46461422 tcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctttag 46461323  T
Q  122 attattccatattta 136  Q
    |||||||||||||||    
T  46461322 attattccatattta 46461308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 46454024 - 46453907
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  46454024 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgctctttctatctt 46453925  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  46453924 tagattattccatattta 46453907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 41452936 - 41452829
Alignment:
Q  206 tggattcaccaagcgcgttctcaggagtgacatctatattatgagaactcttaaacgaagggtttcctgattctatgccctgaggatgcaatgatccatg 305  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  41452936 tggattcaccaagcacgtgctcaggagtgacatctatattatgaaaactcttaaacgaagggtttcctgattctatgcccagaggatgcaatgatccatt 41452837  T
Q  306 atgtccat 313  Q
    ||||||||    
T  41452836 atgtccat 41452829  T

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Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 24876690 - 24876807
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24876690 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcattttccatctt 24876789  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  24876790 tagattattccatattta 24876807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 24881175 - 24881292
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24881175 acttcaaacaattataaacctctcatatactttccatcctattattactcttatcctagagtaaacattcctttgcgttattctttgcactttccatctt 24881274  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  24881275 tagattattccatattta 24881292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 9950236 - 9950119
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9950236 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttacattattctttgcactttccatctt 9950137  T
Q  119 tagattattccatattta 136  Q
    ||||||||||||||||||    
T  9950136 tagattattccatattta 9950119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 9955223 - 9955106
Alignment:
Q  21 ttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatcttta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  9955223 ttcaaacaattataaacctctcatgtactctccatcctattattactcctatcctagagtaaacattcatttacattattctttgcactttccatcttta 9955124  T
Q  121 gattattccatatttact 138  Q
     |||||||||||||||||    
T  9955123 aattattccatatttact 9955106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 32213726 - 32213837
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaacattcctttgcattattctttgcactttccatctt 118  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||||| | ||||||      ||||||||||||||||| |||||||||||||    
T  32213726 acttcaaacaattataaatctctgatgtactctccttcctattattactcttattccagagta------cctttgcattattctttacactttccatctt 32213819  T
Q  119 tagattattccatattta 136  Q
    || |||||||||||||||    
T  32213820 taaattattccatattta 32213837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 32213213 - 32213147
Alignment:
Q  19 acttcaaacaattataaacctctcatgtactctccatcctattattactcttatcctagagtaaaca 85  Q
    ||||||||||||||||| ||| | |||||| |||| |||||||||||||||||| | || |||||||    
T  32213213 acttcaaacaattataatcctatgatgtaccctccttcctattattactcttattccagggtaaaca 32213147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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