View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_low_2 (Length: 586)
Name: NF7405_low_2
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 42985119 - 42985664
Alignment:
| Q |
16 |
atacattttctgtttagatagctaccatgagatattaagtagtgtcaaattcaaagttatcagacactatcattcatcctgcttgcttcgcaagtgggga |
115 |
Q |
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| T |
42985119 |
atacattttctgtttagatagctaccatgagatattaagtagtgtcaaattcaaagttatcagacactatcattcatcctgcttgcttcgcaagtgggga |
42985218 |
T |
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| Q |
116 |
aaacttcacaaaaggaaggtgatcagagccacacatacctgacaatacccaacatcagagtcacggaaagaatatgcaacaagaacacgcctaagagcag |
215 |
Q |
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| T |
42985219 |
aaacttcacaaaaggaaggtgatcagagccacacatacctgacaatacccaacatcagagtcacggaaagaatatgcaacaagaacacgcctaagagcag |
42985318 |
T |
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| Q |
216 |
catgcccctcaggtgtgtccagccatgcgtgaccagggaaggttcgcggtaggtcctgtagaaatggttatgaaaattaattacaaatagaataaaagta |
315 |
Q |
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| T |
42985319 |
catgcccctcaggtgtgtccagccatgcgtgaccagggaaggttcgcggtaggtcctgtagaaatggttatgaaaattaattataaacagaataaaagta |
42985418 |
T |
|
| Q |
316 |
acgatctttttggcatctagacaagttcaattcactctcaaacagatattcaatgacaaatgaacatataaagatcgcatcaaacactctgatgaccgca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42985419 |
acgatctttttggcatctagacaagttcaattcactctcaaacagatattcaatgacaaatgaacatataaagatcgcatcaaacactctgatgaccgca |
42985518 |
T |
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| Q |
416 |
gtcccttctccaaactaatggaattcacattgttggaaaagtagataagtaaatcgaaatcccaaacaatcaagatattaaagtccgaccacgatcttta |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
42985519 |
gtcccttctccaaactaatggaattcacattgttggaaaagtagataagtaaatcgaaatc---------caagatattaaaatccgaccacgatcttta |
42985609 |
T |
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| Q |
516 |
aactgcatcgaggagatgaccacgcaggttcatatgtttttctgatcagcatata |
570 |
Q |
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| T |
42985610 |
aactgcatcgaggagatgaccacgcaggttcatatgtttttctgatcagcatata |
42985664 |
T |
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