View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7405_low_22 (Length: 247)
Name: NF7405_low_22
Description: NF7405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7405_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 34721349 - 34721441
Alignment:
| Q |
142 |
gcattgttttttggtctgaagtttgctaatagtatgggttgcaatcaagtttgttgctattcagacttgaaaactattattgatattgtttct |
234 |
Q |
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| T |
34721349 |
gcattgttttttggtttgaagcttgctaataatatgggttgcaatcaagtttgttgctattcagactcgaaaactattattgatattgtttct |
34721441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 51300777 - 51300668
Alignment:
| Q |
119 |
ataatacttatgcggaacttatagcattgttttttggtctgaagtttgctaatagtatgggttgcaatcaagtttgttgctattcagacttgaaaactat |
218 |
Q |
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| T |
51300777 |
ataatactttttcggaacttatgacattgtttattggtctgaagctttataata---tgggttgcaatcaaatttgttgttatccagactcgaaaattat |
51300681 |
T |
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| Q |
219 |
tattgatattgtt |
231 |
Q |
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||||||||||||| |
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| T |
51300680 |
tattgatattgtt |
51300668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 45646002 - 45646114
Alignment:
| Q |
119 |
ataatacttatgcggaacttatagcattgttttttggtctgaagtttgctaatagtatgggttgcaatcaagtttgttgctattcagacttgaaaactat |
218 |
Q |
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||||||||||||||||||| || ||||||||| ||||||||||| ||| ||||| ||| ||||||||||||||||||| ||||| ||| | ||||||||| |
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| T |
45646002 |
ataatacttatgcggaactgatggcattgtttcttggtctgaagcttgttaataatatcggttgcaatcaagtttgttcctattaagaatcgaaaactat |
45646101 |
T |
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| Q |
219 |
tattgatattgtt |
231 |
Q |
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| T |
45646102 |
taatgatattgtt |
45646114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 19998270 - 19998382
Alignment:
| Q |
119 |
ataatacttatgcggaacttatagcattgttttttggtctgaagtttgctaatagtatgggttgcaatcaagtttgttgctattcagacttgaaaactat |
218 |
Q |
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|||||||||||||||| ||||| ||||||||| || ||||||| ||||||| | ||| |||||||||||| |||||||| ||||||||| |||||||| |
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| T |
19998270 |
ataatacttatgcggagcttatggcattgtttctttttctgaagcttgctaagaatattggttgcaatcaaatttgttgccattcagactcaaaaactat |
19998369 |
T |
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| Q |
219 |
tattgatattgtt |
231 |
Q |
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||||||||||||| |
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| T |
19998370 |
tattgatattgtt |
19998382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 28949114 - 28949223
Alignment:
| Q |
12 |
aatactcattcactatatggacaacatcgtattttgaattcaaaatcaaattgagtagacaaaagtatttgctctttccctcaccacaaagatgaaatga |
111 |
Q |
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|||||||||| |||| ||||| ||||||||||| |||| |||| ||||||||||||||||||| ||||||||||| || ||| || |||||||||||| |
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| T |
28949114 |
aatactcatttactacatggatgacatcgtatttagaatccaaa-tcaaattgagtagacaaaattatttgctcttcccgtcatcatgaagatgaaatga |
28949212 |
T |
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| Q |
112 |
aacgaatataa |
122 |
Q |
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|| |||||||| |
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| T |
28949213 |
aaagaatataa |
28949223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 26143787 - 26143845
Alignment:
| Q |
174 |
tatgggttgcaatcaagtttgttgctattcagacttgaaaacta-ttattgatattgtt |
231 |
Q |
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|||||||||||||||| ||||||| |||| |||||||||||||| || ||||||||||| |
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| T |
26143787 |
tatgggttgcaatcaaatttgttgttatttagacttgaaaactattttttgatattgtt |
26143845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 1515214 - 1515105
Alignment:
| Q |
120 |
taatacttatgcggaacttatagcattgttttttggtctgaagtttgctaatagtatgggttgcaatcaagtttgttgctattcagacttgaaaactatt |
219 |
Q |
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|||||||||||| ||||||| || |||||| || || |||| |||| || | ||| ||||||||||| |||||| |||||| ||| |||||||| | |
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| T |
1515214 |
taatacttatgcagaacttacggctttgtttctttatcagaagattgccaagaatattggttgcaatcatatttgttcctattcgaactcgaaaactact |
1515115 |
T |
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| Q |
220 |
attgatattg |
229 |
Q |
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|||||||||| |
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| T |
1515114 |
attgatattg |
1515105 |
T |
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